Result of FASTA (ccds) for
pF1KB8408
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8408, 570 aa
1>>>pF1KB8408 570 - 570 aa - 570 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6219+/-0.00106; mu= 16.7219+/- 0.063
mean_var=64.3323+/-12.785, 0's: 0 Z-trim(102.9): 22 B-trim: 2 in 1/48
Lambda= 0.159904
statistics sampled from 7132 (7148) to 7132 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.587), E-opt: 0.2 (0.22), width: 16
Scan time: 3.380
The best scores are: opt bits E(32554)
CCDS13111.1 MKKS gene_id:8195|Hs108|chr20 ( 570) 3750 874.3 0
CCDS1140.2 CCT3 gene_id:7203|Hs108|chr1 ( 545) 287 75.4 2e-13
>>CCDS13111.1 MKKS gene_id:8195|Hs108|chr20 (570 aa)
initn: 3750 init1: 3750 opt: 3750 Z-score: 4671.9 bits: 874.3 E(32554): 0
Smith-Waterman score: 3750; 100.0% identity (100.0% similar) in 570 aa overlap (1-570:1-570)
10 20 30 40 50 60
pF1KB8 MSRLEAKKPSLCKSEPLTTERVRTTLSVLKRIVTSCYGPSGRLKQLHNGFGGYVCTTSQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSRLEAKKPSLCKSEPLTTERVRTTLSVLKRIVTSCYGPSGRLKQLHNGFGGYVCTTSQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SALLSHLLVTHPILKILTASIQNHVSSFSDCGLFTAILCCNLIENVQRLGLTPTTVIRLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SALLSHLLVTHPILKILTASIQNHVSSFSDCGLFTAILCCNLIENVQRLGLTPTTVIRLN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KHLLSLCISYLKSETCGCRIPVDFSSTQILLCLVRSILTSKPACMLTRKETEHVSALILR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KHLLSLCISYLKSETCGCRIPVDFSSTQILLCLVRSILTSKPACMLTRKETEHVSALILR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 AFLLTIPENAEGHIILGKSLIVPLKGQRVIDSTVLPGILIEMSEVQLMRLLPIKKSTALK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AFLLTIPENAEGHIILGKSLIVPLKGQRVIDSTVLPGILIEMSEVQLMRLLPIKKSTALK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 VALFCTTLSGDTSDTGEGTVVVSYGVSLENAVLDQLLNLGRQLISDHVDLVLCQKVIHPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VALFCTTLSGDTSDTGEGTVVVSYGVSLENAVLDQLLNLGRQLISDHVDLVLCQKVIHPS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 LKQFLNMHRIIAIDRIGVTLMEPLTKMTGTQPIGSLGSICPNSYGSVKDVCTAKFGSKHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LKQFLNMHRIIAIDRIGVTLMEPLTKMTGTQPIGSLGSICPNSYGSVKDVCTAKFGSKHF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 FHLIPNEATICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FHLIPNEATICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 IRHKTHNDPESILKDDECTQTELQLIAEAFCSALESVVGSLEHDGGEILTDMKYGHLWSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IRHKTHNDPESILKDDECTQTELQLIAEAFCSALESVVGSLEHDGGEILTDMKYGHLWSV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 QADSPCVANWPDLLSQCGCGLYNSQEELNWSFLRSTRRPFVPQSCLPHEAVGSASNLTLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QADSPCVANWPDLLSQCGCGLYNSQEELNWSFLRSTRRPFVPQSCLPHEAVGSASNLTLD
490 500 510 520 530 540
550 560 570
pF1KB8 CLTAKLSGLQVAVETANLILDLSYVIEDKN
::::::::::::::::::::::::::::::
CCDS13 CLTAKLSGLQVAVETANLILDLSYVIEDKN
550 560 570
>>CCDS1140.2 CCT3 gene_id:7203|Hs108|chr1 (545 aa)
initn: 193 init1: 65 opt: 287 Z-score: 354.6 bits: 75.4 E(32554): 2e-13
Smith-Waterman score: 289; 22.6% identity (54.5% similar) in 483 aa overlap (32-493:36-493)
10 20 30 40 50 60
pF1KB8 SRLEAKKPSLCKSEPLTTERVRTTLSVLKRIVTSCYGPSGRLKQLHNGFGGYVCTTSQSS
:. .: ::.. .:.: . .:: : :....
CCDS11 PVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIV-MTNDGN
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 ALLSHLLVTHPILKILTASIQNHVSSFSDCGLFTAILCCNLI---ENVQRLGLTPTTVIR
:.: .. : :: : . ... .: . :: ... :. . . ::.::
CCDS11 AILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVIS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 LNKHLLSLCISYLKSETCGCRIPVDFSSTQILLCLVRSILTSKPACMLTRKETEHVSALI
.. :. :: ::. . ::::.:.....: .. : .:.: ..: . . .
CCDS11 AYRKALDDMISTLKKIS----IPVDISDSDMMLNIINSSITTKA---ISRWSSLACNIAL
130 140 150 160 170
180 190 200 210 220 230
pF1KB8 LRAFLLTIPENAEGHIILGK-SLIVPLKGQRVIDSTVLPGILIEMSEVQLMRLLPIKKST
. .. . ::.. .: . : . . . : . :: :: :..:. ..: :. :.
CCDS11 DAVKMVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMIN-KDVTHPRMRRYIKNP
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 ALKVALFCTTL---SGDTSDTGEGTVVVSYG--VSLENAVLDQLLNLGRQLISDHVDLVL
...:. ..: .:... : : .. ...:. ..:: . ..:. . :.:.
CCDS11 --RIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCE---DIIQLKPDVVI
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 CQKVIHPSLKQFLNMHRIIAIDRIGVTLMEPLTKMTGTQPIGSLGSICPNSYGSVKDVCT
.: : ...: : :: :. : . ... :.. .. . .. :. .
CCDS11 TEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLE
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB8 AKFGSKHFFHLIPN--EATICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGG
: . ..: .: . . :..:: . . .:.. . : :..: . .: .: . ::
CCDS11 IKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGG
360 370 380 390 400 410
420 430 440 450 460
pF1KB8 GCTETHLAAYIRHKTHNDPESILKDDECTQTELQLIAEAFCSALESVVGSLEHDGG----
: .: .: : : :. : .: : .: .::: . .: .. :
CCDS11 GASEMAVA-------HALTE---KSKAMTGVE-QWPYRAVAQALEVIPRTLIQNCGASTI
420 430 440 450 460
470 480 490 500 510 520
pF1KB8 EILTDMKYGHL------WSVQADSPCVANWPDLLSQCGCGLYNSQEELNWSFLRSTRRPF
..::... : :.:.... ... .:
CCDS11 RLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID
470 480 490 500 510 520
530 540 550 560 570
pF1KB8 VPQSCLPHEAVGSASNLTLDCLTAKLSGLQVAVETANLILDLSYVIEDKN
CCDS11 DIVSGHKKKGDDQSRQGGAPDAGQE
530 540
570 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:41:17 2016 done: Fri Nov 4 12:41:17 2016
Total Scan time: 3.380 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]