Result of FASTA (omim) for
pF1KB8406
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8406, 261 aa
1>>>pF1KB8406 261 - 261 aa - 261 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5025+/-0.000723; mu= 4.9122+/- 0.044
mean_var=274.2442+/-56.309, 0's: 0 Z-trim(112.3): 2088 B-trim: 107 in 1/50
Lambda= 0.077447
statistics sampled from 18914 (21232) to 18914 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.549), E-opt: 0.2 (0.249), width: 16
Scan time: 5.910
The best scores are: opt bits E(85289)
XP_011538540 (OMIM: 601069) PREDICTED: zinc finger ( 458) 1178 145.6 1.5e-34
NP_001092752 (OMIM: 601069) zinc finger protein 23 ( 458) 1178 145.6 1.5e-34
NP_001092753 (OMIM: 601069) zinc finger protein 23 ( 458) 1178 145.6 1.5e-34
NP_001311277 (OMIM: 601069) zinc finger protein 23 ( 458) 1178 145.6 1.5e-34
NP_005665 (OMIM: 601069) zinc finger protein 239 i ( 458) 1178 145.6 1.5e-34
NP_001311276 (OMIM: 601069) zinc finger protein 23 ( 458) 1178 145.6 1.5e-34
NP_001092754 (OMIM: 601069) zinc finger protein 23 ( 458) 1178 145.6 1.5e-34
NP_001311280 (OMIM: 601069) zinc finger protein 23 ( 458) 1178 145.6 1.5e-34
XP_006718066 (OMIM: 601069) PREDICTED: zinc finger ( 458) 1178 145.6 1.5e-34
XP_005271889 (OMIM: 601069) PREDICTED: zinc finger ( 458) 1178 145.6 1.5e-34
NP_001311278 (OMIM: 601069) zinc finger protein 23 ( 458) 1178 145.6 1.5e-34
NP_001311279 (OMIM: 601069) zinc finger protein 23 ( 458) 1178 145.6 1.5e-34
XP_011538539 (OMIM: 601069) PREDICTED: zinc finger ( 500) 1178 145.7 1.5e-34
XP_011538537 (OMIM: 601069) PREDICTED: zinc finger ( 500) 1178 145.7 1.5e-34
XP_006718064 (OMIM: 601069) PREDICTED: zinc finger ( 500) 1178 145.7 1.5e-34
NP_001311281 (OMIM: 601069) zinc finger protein 23 ( 500) 1178 145.7 1.5e-34
XP_011538536 (OMIM: 601069) PREDICTED: zinc finger ( 500) 1178 145.7 1.5e-34
XP_011538538 (OMIM: 601069) PREDICTED: zinc finger ( 500) 1178 145.7 1.5e-34
XP_016872229 (OMIM: 601069) PREDICTED: zinc finger ( 500) 1178 145.7 1.5e-34
NP_001311282 (OMIM: 601069) zinc finger protein 23 ( 571) 1178 145.8 1.7e-34
XP_011538534 (OMIM: 601069) PREDICTED: zinc finger ( 602) 1178 145.8 1.7e-34
NP_037512 (OMIM: 603994) zinc finger protein 112 i ( 907) 1161 144.2 8.1e-34
NP_001076804 (OMIM: 603994) zinc finger protein 11 ( 913) 1161 144.2 8.2e-34
XP_006718372 (OMIM: 605015) PREDICTED: zinc finger ( 592) 1156 143.3 9.3e-34
XP_011518659 (OMIM: 605015) PREDICTED: zinc finger ( 592) 1156 143.3 9.3e-34
XP_016873758 (OMIM: 605015) PREDICTED: zinc finger ( 592) 1156 143.3 9.3e-34
XP_005253186 (OMIM: 605015) PREDICTED: zinc finger ( 592) 1156 143.3 9.3e-34
NP_037381 (OMIM: 605015) zinc finger protein 214 [ ( 606) 1156 143.4 9.5e-34
XP_006718371 (OMIM: 605015) PREDICTED: zinc finger ( 606) 1156 143.4 9.5e-34
XP_005253185 (OMIM: 605015) PREDICTED: zinc finger ( 606) 1156 143.4 9.5e-34
XP_011518657 (OMIM: 605015) PREDICTED: zinc finger ( 617) 1156 143.4 9.6e-34
XP_016882719 (OMIM: 194554) PREDICTED: zinc finger ( 646) 1148 142.5 1.8e-33
XP_016882718 (OMIM: 194554) PREDICTED: zinc finger ( 646) 1148 142.5 1.8e-33
XP_016882717 (OMIM: 194554) PREDICTED: zinc finger ( 646) 1148 142.5 1.8e-33
XP_011525573 (OMIM: 194554) PREDICTED: zinc finger ( 682) 1148 142.5 1.9e-33
XP_011525575 (OMIM: 194554) PREDICTED: zinc finger ( 682) 1148 142.5 1.9e-33
XP_016882709 (OMIM: 194554) PREDICTED: zinc finger ( 682) 1148 142.5 1.9e-33
XP_016882707 (OMIM: 194554) PREDICTED: zinc finger ( 682) 1148 142.5 1.9e-33
XP_016882706 (OMIM: 194554) PREDICTED: zinc finger ( 682) 1148 142.5 1.9e-33
XP_011525571 (OMIM: 194554) PREDICTED: zinc finger ( 682) 1148 142.5 1.9e-33
XP_016882715 (OMIM: 194554) PREDICTED: zinc finger ( 682) 1148 142.5 1.9e-33
XP_016882714 (OMIM: 194554) PREDICTED: zinc finger ( 682) 1148 142.5 1.9e-33
XP_016882708 (OMIM: 194554) PREDICTED: zinc finger ( 682) 1148 142.5 1.9e-33
XP_016882713 (OMIM: 194554) PREDICTED: zinc finger ( 682) 1148 142.5 1.9e-33
XP_016882716 (OMIM: 194554) PREDICTED: zinc finger ( 682) 1148 142.5 1.9e-33
XP_016882712 (OMIM: 194554) PREDICTED: zinc finger ( 682) 1148 142.5 1.9e-33
XP_016882710 (OMIM: 194554) PREDICTED: zinc finger ( 682) 1148 142.5 1.9e-33
NP_003416 (OMIM: 194554) zinc finger protein 45 [H ( 682) 1148 142.5 1.9e-33
XP_011525569 (OMIM: 194554) PREDICTED: zinc finger ( 682) 1148 142.5 1.9e-33
XP_016882711 (OMIM: 194554) PREDICTED: zinc finger ( 682) 1148 142.5 1.9e-33
>>XP_011538540 (OMIM: 601069) PREDICTED: zinc finger pro (458 aa)
initn: 4092 init1: 1150 opt: 1178 Z-score: 741.5 bits: 145.6 E(85289): 1.5e-34
Smith-Waterman score: 1178; 63.2% identity (83.6% similar) in 250 aa overlap (3-252:207-456)
10 20 30
pF1KB8 MIYKCPMCREFFSERADLFMHQKIHTAEKPHK
:.: .: . ::. ..:..::. :: :::.:
XP_011 KPCDHNNCGKILNTSPDGHPYEKIHTAEKQYECSQCGKNFSQSSELLLHQRDHTEEKPYK
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB8 CDKCDKGFFHISELHIHWRDHTGEKVYKCDDCGKDFSTTTKLNRHKKIHTVEKPYKCYEC
:..: ::: . : : :: :: :: :::: ::: :. ...: :. .:: :::::: .:
XP_011 CEQCGKGFTRSSSLLIHQAVHTDEKPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKC
240 250 260 270 280 290
100 110 120 130 140 150
pF1KB8 GKAFNWSSHLQIHMRVHTGEKPYVCSECGRGFSNSSNLCMHQRVHTGEKPFKCEECGKAF
::.:. ::.:.::.::::::::: : ::: .::. ::: .::::::::.:.:: ::::.:
XP_011 GKGFSQSSKLHIHQRVHTGEKPYECEECGMSFSQRSNLHIHQRVHTGERPYKCGECGKGF
300 310 320 330 340 350
160 170 180 190 200 210
pF1KB8 RHTSSLCMHQRVHTGEKPYKCYECGKAFSQSSSLCIHQRVHTGEKPYRCCGCGKAFSQSS
..:.: .:. .:::::::.::::::.:::::.: :: :::::::::.: :::.:::::
XP_011 SQSSNLHIHRCIHTGEKPYQCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSS
360 370 380 390 400 410
220 230 240 250 260
pF1KB8 SLCIHQRVHTGEKPFKCDECGKAFSQSTSLCIHQRVHTKERNHLKISVI
.: :::::::::::..:..:::.::::..: :::::: :.
XP_011 KLLIHQRVHTGEKPYECSKCGKGFSQSSNLHIHQRVHKKDPR
420 430 440 450
>>NP_001092752 (OMIM: 601069) zinc finger protein 239 is (458 aa)
initn: 4092 init1: 1150 opt: 1178 Z-score: 741.5 bits: 145.6 E(85289): 1.5e-34
Smith-Waterman score: 1178; 63.2% identity (83.6% similar) in 250 aa overlap (3-252:207-456)
10 20 30
pF1KB8 MIYKCPMCREFFSERADLFMHQKIHTAEKPHK
:.: .: . ::. ..:..::. :: :::.:
NP_001 KPCDHNNCGKILNTSPDGHPYEKIHTAEKQYECSQCGKNFSQSSELLLHQRDHTEEKPYK
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB8 CDKCDKGFFHISELHIHWRDHTGEKVYKCDDCGKDFSTTTKLNRHKKIHTVEKPYKCYEC
:..: ::: . : : :: :: :: :::: ::: :. ...: :. .:: :::::: .:
NP_001 CEQCGKGFTRSSSLLIHQAVHTDEKPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKC
240 250 260 270 280 290
100 110 120 130 140 150
pF1KB8 GKAFNWSSHLQIHMRVHTGEKPYVCSECGRGFSNSSNLCMHQRVHTGEKPFKCEECGKAF
::.:. ::.:.::.::::::::: : ::: .::. ::: .::::::::.:.:: ::::.:
NP_001 GKGFSQSSKLHIHQRVHTGEKPYECEECGMSFSQRSNLHIHQRVHTGERPYKCGECGKGF
300 310 320 330 340 350
160 170 180 190 200 210
pF1KB8 RHTSSLCMHQRVHTGEKPYKCYECGKAFSQSSSLCIHQRVHTGEKPYRCCGCGKAFSQSS
..:.: .:. .:::::::.::::::.:::::.: :: :::::::::.: :::.:::::
NP_001 SQSSNLHIHRCIHTGEKPYQCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSS
360 370 380 390 400 410
220 230 240 250 260
pF1KB8 SLCIHQRVHTGEKPFKCDECGKAFSQSTSLCIHQRVHTKERNHLKISVI
.: :::::::::::..:..:::.::::..: :::::: :.
NP_001 KLLIHQRVHTGEKPYECSKCGKGFSQSSNLHIHQRVHKKDPR
420 430 440 450
>>NP_001092753 (OMIM: 601069) zinc finger protein 239 is (458 aa)
initn: 4092 init1: 1150 opt: 1178 Z-score: 741.5 bits: 145.6 E(85289): 1.5e-34
Smith-Waterman score: 1178; 63.2% identity (83.6% similar) in 250 aa overlap (3-252:207-456)
10 20 30
pF1KB8 MIYKCPMCREFFSERADLFMHQKIHTAEKPHK
:.: .: . ::. ..:..::. :: :::.:
NP_001 KPCDHNNCGKILNTSPDGHPYEKIHTAEKQYECSQCGKNFSQSSELLLHQRDHTEEKPYK
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB8 CDKCDKGFFHISELHIHWRDHTGEKVYKCDDCGKDFSTTTKLNRHKKIHTVEKPYKCYEC
:..: ::: . : : :: :: :: :::: ::: :. ...: :. .:: :::::: .:
NP_001 CEQCGKGFTRSSSLLIHQAVHTDEKPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKC
240 250 260 270 280 290
100 110 120 130 140 150
pF1KB8 GKAFNWSSHLQIHMRVHTGEKPYVCSECGRGFSNSSNLCMHQRVHTGEKPFKCEECGKAF
::.:. ::.:.::.::::::::: : ::: .::. ::: .::::::::.:.:: ::::.:
NP_001 GKGFSQSSKLHIHQRVHTGEKPYECEECGMSFSQRSNLHIHQRVHTGERPYKCGECGKGF
300 310 320 330 340 350
160 170 180 190 200 210
pF1KB8 RHTSSLCMHQRVHTGEKPYKCYECGKAFSQSSSLCIHQRVHTGEKPYRCCGCGKAFSQSS
..:.: .:. .:::::::.::::::.:::::.: :: :::::::::.: :::.:::::
NP_001 SQSSNLHIHRCIHTGEKPYQCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSS
360 370 380 390 400 410
220 230 240 250 260
pF1KB8 SLCIHQRVHTGEKPFKCDECGKAFSQSTSLCIHQRVHTKERNHLKISVI
.: :::::::::::..:..:::.::::..: :::::: :.
NP_001 KLLIHQRVHTGEKPYECSKCGKGFSQSSNLHIHQRVHKKDPR
420 430 440 450
>>NP_001311277 (OMIM: 601069) zinc finger protein 239 is (458 aa)
initn: 4092 init1: 1150 opt: 1178 Z-score: 741.5 bits: 145.6 E(85289): 1.5e-34
Smith-Waterman score: 1178; 63.2% identity (83.6% similar) in 250 aa overlap (3-252:207-456)
10 20 30
pF1KB8 MIYKCPMCREFFSERADLFMHQKIHTAEKPHK
:.: .: . ::. ..:..::. :: :::.:
NP_001 KPCDHNNCGKILNTSPDGHPYEKIHTAEKQYECSQCGKNFSQSSELLLHQRDHTEEKPYK
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB8 CDKCDKGFFHISELHIHWRDHTGEKVYKCDDCGKDFSTTTKLNRHKKIHTVEKPYKCYEC
:..: ::: . : : :: :: :: :::: ::: :. ...: :. .:: :::::: .:
NP_001 CEQCGKGFTRSSSLLIHQAVHTDEKPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKC
240 250 260 270 280 290
100 110 120 130 140 150
pF1KB8 GKAFNWSSHLQIHMRVHTGEKPYVCSECGRGFSNSSNLCMHQRVHTGEKPFKCEECGKAF
::.:. ::.:.::.::::::::: : ::: .::. ::: .::::::::.:.:: ::::.:
NP_001 GKGFSQSSKLHIHQRVHTGEKPYECEECGMSFSQRSNLHIHQRVHTGERPYKCGECGKGF
300 310 320 330 340 350
160 170 180 190 200 210
pF1KB8 RHTSSLCMHQRVHTGEKPYKCYECGKAFSQSSSLCIHQRVHTGEKPYRCCGCGKAFSQSS
..:.: .:. .:::::::.::::::.:::::.: :: :::::::::.: :::.:::::
NP_001 SQSSNLHIHRCIHTGEKPYQCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSS
360 370 380 390 400 410
220 230 240 250 260
pF1KB8 SLCIHQRVHTGEKPFKCDECGKAFSQSTSLCIHQRVHTKERNHLKISVI
.: :::::::::::..:..:::.::::..: :::::: :.
NP_001 KLLIHQRVHTGEKPYECSKCGKGFSQSSNLHIHQRVHKKDPR
420 430 440 450
>>NP_005665 (OMIM: 601069) zinc finger protein 239 isofo (458 aa)
initn: 4092 init1: 1150 opt: 1178 Z-score: 741.5 bits: 145.6 E(85289): 1.5e-34
Smith-Waterman score: 1178; 63.2% identity (83.6% similar) in 250 aa overlap (3-252:207-456)
10 20 30
pF1KB8 MIYKCPMCREFFSERADLFMHQKIHTAEKPHK
:.: .: . ::. ..:..::. :: :::.:
NP_005 KPCDHNNCGKILNTSPDGHPYEKIHTAEKQYECSQCGKNFSQSSELLLHQRDHTEEKPYK
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB8 CDKCDKGFFHISELHIHWRDHTGEKVYKCDDCGKDFSTTTKLNRHKKIHTVEKPYKCYEC
:..: ::: . : : :: :: :: :::: ::: :. ...: :. .:: :::::: .:
NP_005 CEQCGKGFTRSSSLLIHQAVHTDEKPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKC
240 250 260 270 280 290
100 110 120 130 140 150
pF1KB8 GKAFNWSSHLQIHMRVHTGEKPYVCSECGRGFSNSSNLCMHQRVHTGEKPFKCEECGKAF
::.:. ::.:.::.::::::::: : ::: .::. ::: .::::::::.:.:: ::::.:
NP_005 GKGFSQSSKLHIHQRVHTGEKPYECEECGMSFSQRSNLHIHQRVHTGERPYKCGECGKGF
300 310 320 330 340 350
160 170 180 190 200 210
pF1KB8 RHTSSLCMHQRVHTGEKPYKCYECGKAFSQSSSLCIHQRVHTGEKPYRCCGCGKAFSQSS
..:.: .:. .:::::::.::::::.:::::.: :: :::::::::.: :::.:::::
NP_005 SQSSNLHIHRCIHTGEKPYQCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSS
360 370 380 390 400 410
220 230 240 250 260
pF1KB8 SLCIHQRVHTGEKPFKCDECGKAFSQSTSLCIHQRVHTKERNHLKISVI
.: :::::::::::..:..:::.::::..: :::::: :.
NP_005 KLLIHQRVHTGEKPYECSKCGKGFSQSSNLHIHQRVHKKDPR
420 430 440 450
>>NP_001311276 (OMIM: 601069) zinc finger protein 239 is (458 aa)
initn: 4092 init1: 1150 opt: 1178 Z-score: 741.5 bits: 145.6 E(85289): 1.5e-34
Smith-Waterman score: 1178; 63.2% identity (83.6% similar) in 250 aa overlap (3-252:207-456)
10 20 30
pF1KB8 MIYKCPMCREFFSERADLFMHQKIHTAEKPHK
:.: .: . ::. ..:..::. :: :::.:
NP_001 KPCDHNNCGKILNTSPDGHPYEKIHTAEKQYECSQCGKNFSQSSELLLHQRDHTEEKPYK
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB8 CDKCDKGFFHISELHIHWRDHTGEKVYKCDDCGKDFSTTTKLNRHKKIHTVEKPYKCYEC
:..: ::: . : : :: :: :: :::: ::: :. ...: :. .:: :::::: .:
NP_001 CEQCGKGFTRSSSLLIHQAVHTDEKPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKC
240 250 260 270 280 290
100 110 120 130 140 150
pF1KB8 GKAFNWSSHLQIHMRVHTGEKPYVCSECGRGFSNSSNLCMHQRVHTGEKPFKCEECGKAF
::.:. ::.:.::.::::::::: : ::: .::. ::: .::::::::.:.:: ::::.:
NP_001 GKGFSQSSKLHIHQRVHTGEKPYECEECGMSFSQRSNLHIHQRVHTGERPYKCGECGKGF
300 310 320 330 340 350
160 170 180 190 200 210
pF1KB8 RHTSSLCMHQRVHTGEKPYKCYECGKAFSQSSSLCIHQRVHTGEKPYRCCGCGKAFSQSS
..:.: .:. .:::::::.::::::.:::::.: :: :::::::::.: :::.:::::
NP_001 SQSSNLHIHRCIHTGEKPYQCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSS
360 370 380 390 400 410
220 230 240 250 260
pF1KB8 SLCIHQRVHTGEKPFKCDECGKAFSQSTSLCIHQRVHTKERNHLKISVI
.: :::::::::::..:..:::.::::..: :::::: :.
NP_001 KLLIHQRVHTGEKPYECSKCGKGFSQSSNLHIHQRVHKKDPR
420 430 440 450
>>NP_001092754 (OMIM: 601069) zinc finger protein 239 is (458 aa)
initn: 4092 init1: 1150 opt: 1178 Z-score: 741.5 bits: 145.6 E(85289): 1.5e-34
Smith-Waterman score: 1178; 63.2% identity (83.6% similar) in 250 aa overlap (3-252:207-456)
10 20 30
pF1KB8 MIYKCPMCREFFSERADLFMHQKIHTAEKPHK
:.: .: . ::. ..:..::. :: :::.:
NP_001 KPCDHNNCGKILNTSPDGHPYEKIHTAEKQYECSQCGKNFSQSSELLLHQRDHTEEKPYK
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB8 CDKCDKGFFHISELHIHWRDHTGEKVYKCDDCGKDFSTTTKLNRHKKIHTVEKPYKCYEC
:..: ::: . : : :: :: :: :::: ::: :. ...: :. .:: :::::: .:
NP_001 CEQCGKGFTRSSSLLIHQAVHTDEKPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKC
240 250 260 270 280 290
100 110 120 130 140 150
pF1KB8 GKAFNWSSHLQIHMRVHTGEKPYVCSECGRGFSNSSNLCMHQRVHTGEKPFKCEECGKAF
::.:. ::.:.::.::::::::: : ::: .::. ::: .::::::::.:.:: ::::.:
NP_001 GKGFSQSSKLHIHQRVHTGEKPYECEECGMSFSQRSNLHIHQRVHTGERPYKCGECGKGF
300 310 320 330 340 350
160 170 180 190 200 210
pF1KB8 RHTSSLCMHQRVHTGEKPYKCYECGKAFSQSSSLCIHQRVHTGEKPYRCCGCGKAFSQSS
..:.: .:. .:::::::.::::::.:::::.: :: :::::::::.: :::.:::::
NP_001 SQSSNLHIHRCIHTGEKPYQCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSS
360 370 380 390 400 410
220 230 240 250 260
pF1KB8 SLCIHQRVHTGEKPFKCDECGKAFSQSTSLCIHQRVHTKERNHLKISVI
.: :::::::::::..:..:::.::::..: :::::: :.
NP_001 KLLIHQRVHTGEKPYECSKCGKGFSQSSNLHIHQRVHKKDPR
420 430 440 450
>>NP_001311280 (OMIM: 601069) zinc finger protein 239 is (458 aa)
initn: 4092 init1: 1150 opt: 1178 Z-score: 741.5 bits: 145.6 E(85289): 1.5e-34
Smith-Waterman score: 1178; 63.2% identity (83.6% similar) in 250 aa overlap (3-252:207-456)
10 20 30
pF1KB8 MIYKCPMCREFFSERADLFMHQKIHTAEKPHK
:.: .: . ::. ..:..::. :: :::.:
NP_001 KPCDHNNCGKILNTSPDGHPYEKIHTAEKQYECSQCGKNFSQSSELLLHQRDHTEEKPYK
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB8 CDKCDKGFFHISELHIHWRDHTGEKVYKCDDCGKDFSTTTKLNRHKKIHTVEKPYKCYEC
:..: ::: . : : :: :: :: :::: ::: :. ...: :. .:: :::::: .:
NP_001 CEQCGKGFTRSSSLLIHQAVHTDEKPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKC
240 250 260 270 280 290
100 110 120 130 140 150
pF1KB8 GKAFNWSSHLQIHMRVHTGEKPYVCSECGRGFSNSSNLCMHQRVHTGEKPFKCEECGKAF
::.:. ::.:.::.::::::::: : ::: .::. ::: .::::::::.:.:: ::::.:
NP_001 GKGFSQSSKLHIHQRVHTGEKPYECEECGMSFSQRSNLHIHQRVHTGERPYKCGECGKGF
300 310 320 330 340 350
160 170 180 190 200 210
pF1KB8 RHTSSLCMHQRVHTGEKPYKCYECGKAFSQSSSLCIHQRVHTGEKPYRCCGCGKAFSQSS
..:.: .:. .:::::::.::::::.:::::.: :: :::::::::.: :::.:::::
NP_001 SQSSNLHIHRCIHTGEKPYQCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSS
360 370 380 390 400 410
220 230 240 250 260
pF1KB8 SLCIHQRVHTGEKPFKCDECGKAFSQSTSLCIHQRVHTKERNHLKISVI
.: :::::::::::..:..:::.::::..: :::::: :.
NP_001 KLLIHQRVHTGEKPYECSKCGKGFSQSSNLHIHQRVHKKDPR
420 430 440 450
>>XP_006718066 (OMIM: 601069) PREDICTED: zinc finger pro (458 aa)
initn: 4092 init1: 1150 opt: 1178 Z-score: 741.5 bits: 145.6 E(85289): 1.5e-34
Smith-Waterman score: 1178; 63.2% identity (83.6% similar) in 250 aa overlap (3-252:207-456)
10 20 30
pF1KB8 MIYKCPMCREFFSERADLFMHQKIHTAEKPHK
:.: .: . ::. ..:..::. :: :::.:
XP_006 KPCDHNNCGKILNTSPDGHPYEKIHTAEKQYECSQCGKNFSQSSELLLHQRDHTEEKPYK
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB8 CDKCDKGFFHISELHIHWRDHTGEKVYKCDDCGKDFSTTTKLNRHKKIHTVEKPYKCYEC
:..: ::: . : : :: :: :: :::: ::: :. ...: :. .:: :::::: .:
XP_006 CEQCGKGFTRSSSLLIHQAVHTDEKPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKC
240 250 260 270 280 290
100 110 120 130 140 150
pF1KB8 GKAFNWSSHLQIHMRVHTGEKPYVCSECGRGFSNSSNLCMHQRVHTGEKPFKCEECGKAF
::.:. ::.:.::.::::::::: : ::: .::. ::: .::::::::.:.:: ::::.:
XP_006 GKGFSQSSKLHIHQRVHTGEKPYECEECGMSFSQRSNLHIHQRVHTGERPYKCGECGKGF
300 310 320 330 340 350
160 170 180 190 200 210
pF1KB8 RHTSSLCMHQRVHTGEKPYKCYECGKAFSQSSSLCIHQRVHTGEKPYRCCGCGKAFSQSS
..:.: .:. .:::::::.::::::.:::::.: :: :::::::::.: :::.:::::
XP_006 SQSSNLHIHRCIHTGEKPYQCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSS
360 370 380 390 400 410
220 230 240 250 260
pF1KB8 SLCIHQRVHTGEKPFKCDECGKAFSQSTSLCIHQRVHTKERNHLKISVI
.: :::::::::::..:..:::.::::..: :::::: :.
XP_006 KLLIHQRVHTGEKPYECSKCGKGFSQSSNLHIHQRVHKKDPR
420 430 440 450
>>XP_005271889 (OMIM: 601069) PREDICTED: zinc finger pro (458 aa)
initn: 4092 init1: 1150 opt: 1178 Z-score: 741.5 bits: 145.6 E(85289): 1.5e-34
Smith-Waterman score: 1178; 63.2% identity (83.6% similar) in 250 aa overlap (3-252:207-456)
10 20 30
pF1KB8 MIYKCPMCREFFSERADLFMHQKIHTAEKPHK
:.: .: . ::. ..:..::. :: :::.:
XP_005 KPCDHNNCGKILNTSPDGHPYEKIHTAEKQYECSQCGKNFSQSSELLLHQRDHTEEKPYK
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB8 CDKCDKGFFHISELHIHWRDHTGEKVYKCDDCGKDFSTTTKLNRHKKIHTVEKPYKCYEC
:..: ::: . : : :: :: :: :::: ::: :. ...: :. .:: :::::: .:
XP_005 CEQCGKGFTRSSSLLIHQAVHTDEKPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKC
240 250 260 270 280 290
100 110 120 130 140 150
pF1KB8 GKAFNWSSHLQIHMRVHTGEKPYVCSECGRGFSNSSNLCMHQRVHTGEKPFKCEECGKAF
::.:. ::.:.::.::::::::: : ::: .::. ::: .::::::::.:.:: ::::.:
XP_005 GKGFSQSSKLHIHQRVHTGEKPYECEECGMSFSQRSNLHIHQRVHTGERPYKCGECGKGF
300 310 320 330 340 350
160 170 180 190 200 210
pF1KB8 RHTSSLCMHQRVHTGEKPYKCYECGKAFSQSSSLCIHQRVHTGEKPYRCCGCGKAFSQSS
..:.: .:. .:::::::.::::::.:::::.: :: :::::::::.: :::.:::::
XP_005 SQSSNLHIHRCIHTGEKPYQCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSS
360 370 380 390 400 410
220 230 240 250 260
pF1KB8 SLCIHQRVHTGEKPFKCDECGKAFSQSTSLCIHQRVHTKERNHLKISVI
.: :::::::::::..:..:::.::::..: :::::: :.
XP_005 KLLIHQRVHTGEKPYECSKCGKGFSQSSNLHIHQRVHKKDPR
420 430 440 450
261 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:40:11 2016 done: Fri Nov 4 12:40:12 2016
Total Scan time: 5.910 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]