FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8400, 211 aa
  1>>>pF1KB8400 211 - 211 aa - 211 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5662+/-0.000404; mu= 8.0183+/- 0.025
 mean_var=103.8506+/-19.965, 0's: 0 Z-trim(113.8): 26  B-trim: 73 in 1/55
 Lambda= 0.125855
 statistics sampled from 23331 (23337) to 23331 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.274), width:  16
 Scan time:  5.830

The best scores are:                                      opt bits E(85289)
NP_004273 (OMIM: 603882) BAG family molecular chap ( 211) 1320 250.0 2.1e-66
XP_011513300 (OMIM: 603882) PREDICTED: BAG family  ( 178) 1083 206.9 1.7e-53
XP_011513301 (OMIM: 603882) PREDICTED: BAG family  ( 178) 1083 206.9 1.7e-53
XP_005249547 (OMIM: 603882) PREDICTED: BAG family  ( 178) 1083 206.9 1.7e-53


>>NP_004273 (OMIM: 603882) BAG family molecular chaperon  (211 aa)
 initn: 1320 init1: 1320 opt: 1320  Z-score: 1313.1  bits: 250.0 E(85289): 2.1e-66
Smith-Waterman score: 1320; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KB8 MAQAKINAKANEGRFCRSSSMADRSSRLLESLDQLELRVEALREAATAVEQEKEILLEMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAQAKINAKANEGRFCRSSSMADRSSRLLESLDQLELRVEALREAATAVEQEKEILLEMI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HSIQNSQDMRQISDGEREELNLTANRLMGRTLTVEVSVETIRNPQQQESLKHATRIIDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 HSIQNSQDMRQISDGEREELNLTANRLMGRTLTVEVSVETIRNPQQQESLKHATRIIDEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VNKFLDDLGNAKSHLMSLYSACSSEVPHGPVDQKFQSIVIGCALEDQKKIKRRLETLLRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VNKFLDDLGNAKSHLMSLYSACSSEVPHGPVDQKFQSIVIGCALEDQKKIKRRLETLLRN
              130       140       150       160       170       180

              190       200       210 
pF1KB8 IENSDKAIKLLEHSKGAGSKTLQQNAESRFN
       :::::::::::::::::::::::::::::::
NP_004 IENSDKAIKLLEHSKGAGSKTLQQNAESRFN
              190       200       210 

>>XP_011513300 (OMIM: 603882) PREDICTED: BAG family mole  (178 aa)
 initn: 1083 init1: 1083 opt: 1083  Z-score: 1081.6  bits: 206.9 E(85289): 1.7e-53
Smith-Waterman score: 1083; 100.0% identity (100.0% similar) in 173 aa overlap (39-211:6-178)

       10        20        30        40        50        60        
pF1KB8 KANEGRFCRSSSMADRSSRLLESLDQLELRVEALREAATAVEQEKEILLEMIHSIQNSQD
                                     ::::::::::::::::::::::::::::::
XP_011                          MPHMWVEALREAATAVEQEKEILLEMIHSIQNSQD
                                        10        20        30     

       70        80        90       100       110       120        
pF1KB8 MRQISDGEREELNLTANRLMGRTLTVEVSVETIRNPQQQESLKHATRIIDEVVNKFLDDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRQISDGEREELNLTANRLMGRTLTVEVSVETIRNPQQQESLKHATRIIDEVVNKFLDDL
          40        50        60        70        80        90     

      130       140       150       160       170       180        
pF1KB8 GNAKSHLMSLYSACSSEVPHGPVDQKFQSIVIGCALEDQKKIKRRLETLLRNIENSDKAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNAKSHLMSLYSACSSEVPHGPVDQKFQSIVIGCALEDQKKIKRRLETLLRNIENSDKAI
         100       110       120       130       140       150     

      190       200       210 
pF1KB8 KLLEHSKGAGSKTLQQNAESRFN
       :::::::::::::::::::::::
XP_011 KLLEHSKGAGSKTLQQNAESRFN
         160       170        

>>XP_011513301 (OMIM: 603882) PREDICTED: BAG family mole  (178 aa)
 initn: 1083 init1: 1083 opt: 1083  Z-score: 1081.6  bits: 206.9 E(85289): 1.7e-53
Smith-Waterman score: 1083; 100.0% identity (100.0% similar) in 173 aa overlap (39-211:6-178)

       10        20        30        40        50        60        
pF1KB8 KANEGRFCRSSSMADRSSRLLESLDQLELRVEALREAATAVEQEKEILLEMIHSIQNSQD
                                     ::::::::::::::::::::::::::::::
XP_011                          MPHMWVEALREAATAVEQEKEILLEMIHSIQNSQD
                                        10        20        30     

       70        80        90       100       110       120        
pF1KB8 MRQISDGEREELNLTANRLMGRTLTVEVSVETIRNPQQQESLKHATRIIDEVVNKFLDDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRQISDGEREELNLTANRLMGRTLTVEVSVETIRNPQQQESLKHATRIIDEVVNKFLDDL
          40        50        60        70        80        90     

      130       140       150       160       170       180        
pF1KB8 GNAKSHLMSLYSACSSEVPHGPVDQKFQSIVIGCALEDQKKIKRRLETLLRNIENSDKAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNAKSHLMSLYSACSSEVPHGPVDQKFQSIVIGCALEDQKKIKRRLETLLRNIENSDKAI
         100       110       120       130       140       150     

      190       200       210 
pF1KB8 KLLEHSKGAGSKTLQQNAESRFN
       :::::::::::::::::::::::
XP_011 KLLEHSKGAGSKTLQQNAESRFN
         160       170        

>>XP_005249547 (OMIM: 603882) PREDICTED: BAG family mole  (178 aa)
 initn: 1083 init1: 1083 opt: 1083  Z-score: 1081.6  bits: 206.9 E(85289): 1.7e-53
Smith-Waterman score: 1083; 100.0% identity (100.0% similar) in 173 aa overlap (39-211:6-178)

       10        20        30        40        50        60        
pF1KB8 KANEGRFCRSSSMADRSSRLLESLDQLELRVEALREAATAVEQEKEILLEMIHSIQNSQD
                                     ::::::::::::::::::::::::::::::
XP_005                          MPHMWVEALREAATAVEQEKEILLEMIHSIQNSQD
                                        10        20        30     

       70        80        90       100       110       120        
pF1KB8 MRQISDGEREELNLTANRLMGRTLTVEVSVETIRNPQQQESLKHATRIIDEVVNKFLDDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MRQISDGEREELNLTANRLMGRTLTVEVSVETIRNPQQQESLKHATRIIDEVVNKFLDDL
          40        50        60        70        80        90     

      130       140       150       160       170       180        
pF1KB8 GNAKSHLMSLYSACSSEVPHGPVDQKFQSIVIGCALEDQKKIKRRLETLLRNIENSDKAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GNAKSHLMSLYSACSSEVPHGPVDQKFQSIVIGCALEDQKKIKRRLETLLRNIENSDKAI
         100       110       120       130       140       150     

      190       200       210 
pF1KB8 KLLEHSKGAGSKTLQQNAESRFN
       :::::::::::::::::::::::
XP_005 KLLEHSKGAGSKTLQQNAESRFN
         160       170        




211 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:36:30 2016 done: Fri Nov  4 12:36:31 2016
 Total Scan time:  5.830 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]