FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8390, 398 aa
  1>>>pF1KB8390 398 - 398 aa - 398 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.5992+/-0.0011; mu= -17.7039+/- 0.065
 mean_var=653.4952+/-141.233, 0's: 0 Z-trim(118.2): 554  B-trim: 1167 in 1/52
 Lambda= 0.050171
 statistics sampled from 18458 (19154) to 18458 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.841), E-opt: 0.2 (0.588), width:  16
 Scan time:  3.340

The best scores are:                                      opt bits E(32554)
CCDS33322.1 SP5 gene_id:389058|Hs108|chr2          ( 398) 2847 220.3 2.4e-57
CCDS5373.1 SP4 gene_id:6671|Hs108|chr7             ( 784)  746 68.6 2.3e-11


>>CCDS33322.1 SP5 gene_id:389058|Hs108|chr2               (398 aa)
 initn: 2847 init1: 2847 opt: 2847  Z-score: 1142.9  bits: 220.3 E(32554): 2.4e-57
Smith-Waterman score: 2847; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398)

               10        20        30        40        50        60
pF1KB8 MAAVAVLRNDSLQAFLQDRTPSASPDLGKHSPLALLAATCSRIGQPGAAAPPDFLQVPYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAAVAVLRNDSLQAFLQDRTPSASPDLGKHSPLALLAATCSRIGQPGAAAPPDFLQVPYD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PALGSPSRLFHPWTADMPAHSPGALPPPHPSLGLTPQKTHLQPSFGAAHELPLTPPADPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PALGSPSRLFHPWTADMPAHSPGALPPPHPSLGLTPQKTHLQPSFGAAHELPLTPPADPS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YPYEFSPVKMLPSSMAALPASCAPAYVPYAAQAALPPGYSNLLPPPPPPPPPPTCRQLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YPYEFSPVKMLPSSMAALPASCAPAYVPYAAQAALPPGYSNLLPPPPPPPPPPTCRQLSP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 NPAPDDLPWWSIPQAGAGPGASGVPGSGLSGACAGAPHAPRFPASAAAAAAAAAALQRGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NPAPDDLPWWSIPQAGAGPGASGVPGSGLSGACAGAPHAPRFPASAAAAAAAAAALQRGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 VLGPSDFAQYQSQIAALLQTKAPLAATARRCRRCRCPNCQAAGGAPEAEPGKKKQHVCHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VLGPSDFAQYQSQIAALLQTKAPLAATARRCRRCRCPNCQAAGGAPEAEPGKKKQHVCHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 PGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKSFTRSDELQRHLRTHTGEKRFACPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKSFTRSDELQRHLRTHTGEKRFACPE
              310       320       330       340       350       360

              370       380       390        
pF1KB8 CGKRFMRSDHLAKHVKTHQNKKLKVAEAGVKREDARDL
       ::::::::::::::::::::::::::::::::::::::
CCDS33 CGKRFMRSDHLAKHVKTHQNKKLKVAEAGVKREDARDL
              370       380       390        

>>CCDS5373.1 SP4 gene_id:6671|Hs108|chr7                  (784 aa)
 initn: 812 init1: 705 opt: 746  Z-score: 317.4  bits: 68.6 E(32554): 2.3e-11
Smith-Waterman score: 758; 38.8% identity (59.9% similar) in 374 aa overlap (37-382:366-733)

         10        20        30        40        50        60      
pF1KB8 LRNDSLQAFLQDRTPSASPDLGKHSPLALLAATCSRIGQPGAAAPPDFLQVPYDPA--LG
                                     ::: :. .: ..   :. .:   : .  : 
CCDS53 DTLVSSADTGQYASTSASSSERTIEESQTPAATESE-AQSSSQLQPNGMQNAQDQSNSLQ
         340       350       360       370        380       390    

           70        80             90         100              110
pF1KB8 SPSRLFHPWTADMPAHSPG-----ALPPPHPSL--GLTPQKTHLQP-------SFGAAHE
       . . . .:   ..  ..:      :.::   .:  : : :  . ::       . . .. 
CCDS53 QVQIVGQPILQQIQIQQPQQQIIQAIPPQSFQLQSGQTIQTIQQQPLQNVQLQAVNPTQV
          400       410       420       430       440       450    

              120       130        140       150       160         
pF1KB8 LPLTPPADPSYPYEFSPVKMLP-SSMAALPASCAPAYVPYAAQAALPPGYSNLLPPPP--
       :  .:   ::    .. :..   .:.. : .. :      .   .   : ..:    :  
CCDS53 LIRAPTLTPSGQISWQTVQVQNIQSLSNLQVQNAGLSQQLTITPVSSSGGTTLAQIAPVA
          460       470       480       490       500       510    

         170       180       190        200         210       220  
pF1KB8 --PPPPPPTCRQLSPNPAPDDLPWWSIPQAGA-GPGASGVPGS--GLSGACAGAPHAPRF
           :   .  ::.  :   .:   :. . :: :  ..::: .  ...:   :   .   
CCDS53 VAGAPITLNTAQLASVP---NLQTVSVANLGAAGVQVQGVPVTITSVAGQQQGQDGVKVQ
          520       530          540       550       560       570 

            230       240         250       260       270          
pF1KB8 PASAAAAAAAAAALQRGLV--LGPSDFAQYQSQIAALLQTKAPLAATARRCRR--CRCPN
        :. : ...:....  . .  ..:....: . : .   ::.   .  ..: ::  : :::
CCDS53 QATIAPVTVAVGGIANATIGAVSPDQLTQVHLQQGQ--QTSDQEVQPGKRLRRVACSCPN
             580       590       600         610       620         

      280       290       300       310       320       330        
pF1KB8 CQAAGGAPEAEPGKKKQHVCHVPGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKSFT
       :. . :    ::::::::.::. ::::::::::::.::::::::::::.:::.:::: ::
CCDS53 CREGEGRGSNEPGKKKQHICHIEGCGKVYGKTSHLRAHLRWHTGERPFICNWMFCGKRFT
     630       640       650       660       670       680         

      340       350       360       370       380       390        
pF1KB8 RSDELQRHLRTHTGEKRFACPECGKRFMRSDHLAKHVKTHQNKKLKVAEAGVKREDARDL
       :::::::: ::::::::: ::::.:::::::::.::::::::::                
CCDS53 RSDELQRHRRTHTGEKRFECPECSKRFMRSDHLSKHVKTHQNKKGGGTALAIVTSGELDS
     690       700       710       720       730       740         

CCDS53 SVTEVLGSPRIVTVAAISQDSNPATPNVSTNMEEF
     750       760       770       780    




398 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:29:54 2016 done: Fri Nov  4 12:29:54 2016
 Total Scan time:  3.340 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]