Result of FASTA (omim) for
pF1KB8389
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8389, 393 aa
1>>>pF1KB8389 393 - 393 aa - 393 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.0904+/-0.000427; mu= -10.1364+/- 0.027
mean_var=546.0852+/-111.590, 0's: 0 Z-trim(126.0): 89 B-trim: 953 in 1/58
Lambda= 0.054884
statistics sampled from 50874 (51013) to 50874 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.84), E-opt: 0.2 (0.598), width: 16
Scan time: 9.650
The best scores are: opt bits E(85289)
NP_061824 (OMIM: 142957) homeobox protein Hox-A10 ( 410) 2768 233.1 9.4e-61
NP_059105 (OMIM: 605560) homeobox protein Hox-C10 ( 342) 605 61.7 3e-09
NP_002139 (OMIM: 142984,192950) homeobox protein H ( 340) 604 61.6 3.2e-09
NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260) 464 50.4 5.7e-06
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 423 47.3 6.6e-05
NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 416 46.6 7.8e-05
NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272) 414 46.5 9.2e-05
NP_067015 (OMIM: 142986) homeobox protein Hox-D11 ( 338) 400 45.5 0.00023
NP_005514 (OMIM: 142958,605432) homeobox protein H ( 313) 372 43.2 0.001
NP_055027 (OMIM: 605559) homeobox protein Hox-C11 ( 304) 362 42.4 0.0017
>>NP_061824 (OMIM: 142957) homeobox protein Hox-A10 [Hom (410 aa)
initn: 2768 init1: 2768 opt: 2768 Z-score: 1211.7 bits: 233.1 E(85289): 9.4e-61
Smith-Waterman score: 2768; 100.0% identity (100.0% similar) in 393 aa overlap (1-393:18-410)
10 20 30 40
pF1KB8 MSCSESPAANSFLVDSLISSGRGEAGGGGGGAGGGGGGGYYAH
:::::::::::::::::::::::::::::::::::::::::::
NP_061 MSARKGYLLPSPNYPTTMSCSESPAANSFLVDSLISSGRGEAGGGGGGAGGGGGGGYYAH
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 GGVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 GGVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWLD
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 APRSCRMEPPDGPPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 APRSCRMEPPDGPPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPK
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 VSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGP
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 FPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 FPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAE
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB8 ELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMY
310 320 330 340 350 360
350 360 370 380 390
pF1KB8 LTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 LTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS
370 380 390 400 410
>>NP_059105 (OMIM: 605560) homeobox protein Hox-C10 [Hom (342 aa)
initn: 673 init1: 522 opt: 605 Z-score: 287.1 bits: 61.7 E(85289): 3e-09
Smith-Waterman score: 752; 42.1% identity (62.8% similar) in 368 aa overlap (32-393:17-342)
10 20 30 40 50 60
pF1KB8 SCSESPAANSFLVDSLISSGRGEAGGGGGGAGGGGGGGYYAHGGVYLPPAADLPYG-LQS
:. ::: : .:.:. ..:. : ...
NP_059 MTCPRNVTPNSYAEPLAAPGGGERYSRSAGMYMQSGSDFNCGVMRG
10 20 30 40
70 80 90 100 110 120
pF1KB8 CGLFPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWLDAPRSCRMEPPDGPPPPP
::: :.:. ::.:..::. :. ... : .: : : . :.: : : :
NP_059 CGLAPSLS-KRDEGSSPS-------LALNTYPSYLSQLDSWGDPKAAYRLEQPVGRP---
50 60 70 80 90
130 140 150 160 170 180
pF1KB8 QQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPFPRGPPP
.:::. ..:::. :.: ::.: : . :: . : :
NP_059 ----------------LSSCSYPPSVKEENVCCMY-SAEKRAKSGPEAALYSH----PLP
100 110 120 130
190 200 210 220 230
pF1KB8 DGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFP--AQPPGRGFDLPPA
..: :: ::::.:.: : .: .: .::... : :: :. :. :
NP_059 ESC-LGEHE-VPVPSYYRASPSY-SALDKTPHCSGANDFEA-PFEQRASLNPRAEHLESP
140 150 160 170 180 190
240 250 260 270 280 290
pF1KB8 LASGSADAARKERALDSPPPPTL--ACGSGGGSQGDEEAHASSSAAEELSPAPSESSKAS
.:... . .. .. : :. . : .: .: : : .:. ..:: .
NP_059 QLGGKVSFPETPKSDSQTPSPNEIKTEQSLAGPKG------SPSESEKERAKAADSSPDT
200 210 220 230 240
300 310 320 330 340 350
pF1KB8 PEKDSLGNSKGENAA-NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRS
.... . :.::.. ::::::::::::::::::::::::::::::::::::::::::..
NP_059 SDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKT
250 260 270 280 290 300
360 370 380 390
pF1KB8 VHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS
..::::::::::::::::::::::::::::::.::::.
NP_059 INLTDRQVKIWFQNRRMKLKKMNRENRIRELTSNFNFT
310 320 330 340
>>NP_002139 (OMIM: 142984,192950) homeobox protein Hox-D (340 aa)
initn: 864 init1: 514 opt: 604 Z-score: 286.7 bits: 61.6 E(85289): 3.2e-09
Smith-Waterman score: 850; 45.9% identity (64.2% similar) in 394 aa overlap (6-393:7-340)
10 20 30 40 50
pF1KB8 MSCSESPAANSFLVDSLISSGRGEAGGGGGGAGGGGGGGYYAHGGVYLPP-AADL-PYG
:::::.::::::::. :... : . ...:.:: .::. ::
NP_002 MSFPNSSPAANTFLVDSLISACRSDSF-------------YSSSASMYMPPPSADMGTYG
10 20 30 40
60 70 80 90 100 110
pF1KB8 LQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWLDAPRSCRMEPPDGPP
.:.:::.:.:. ::. . ..: ..: : :. .: : : ::::.: :
NP_002 MQTCGLLPSLA-KREVNHQ--------NMGMNVHPYIPQ-VDSWTDPNRSCRIEQP----
50 60 70 80 90
120 130 140 150 160 170
pF1KB8 PPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPFPRG
:: : .:::. ::::::. :.: .:: :. .::. . :
NP_002 --VTQQVP-------------TCSFTTNIKEESNCCMY--SDKRNKL--ISAEVPSYQRL
100 110 120 130
180 190 200 210 220 230
pF1KB8 PPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRGFDLPP
: ..: . . :::::::::::.:.:.: . . . :.. : :: :
NP_002 VP-ESCPV-ENPEVPVPGYFRLSQTYATGK---TQEYNNSPEGSSTVMLQLNPRG-AAKP
140 150 160 170 180
240 250 260 270 280 290
pF1KB8 ALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASP
:.... . .: : :: . :: : .:... :: : .: : .::
NP_002 QLSAAQLQMEKKMNEPVSGQEPTKV------SQV-ESPEAKGGLPEERS-CLAEVSVSSP
190 200 210 220 230 240
300 310 320 330 340 350
pF1KB8 E---KDSLGNSKGEN-AANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS
: :.: . :... ..::::::::::::::::::::::::::::::::::::::::::
NP_002 EVQEKESKEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS
250 260 270 280 290 300
360 370 380 390
pF1KB8 RSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS
.::.::::::::::::::::::::.:::::::::::..::
NP_002 KSVNLTDRQVKIWFQNRRMKLKKMSRENRIRELTANLTFS
310 320 330 340
>>NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [Homo (260 aa)
initn: 470 init1: 392 opt: 464 Z-score: 228.1 bits: 50.4 E(85289): 5.7e-06
Smith-Waterman score: 472; 39.5% identity (58.8% similar) in 243 aa overlap (158-385:25-258)
130 140 150 160 170 180
pF1KB8 PQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPFPRGPPPDGCALGT
:.. : ..: : : : : :: . .
NP_008 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPA--AARPSGLVPDCSDFPS
10 20 30 40 50
190 200 210 220 230 240
pF1KB8 SSGVPVPGYFRLSQAYGTAKG--YGSGGGGAQQLGAGPFPAQP---PGRGFDLPPALASG
: .: :. : : : ... : .::: . : : :.. .:
NP_008 CSFAPKPAVFSTSWAPVPSQSSVVYHPYGPQPHLGADTRYMRTWLEPLSGAVSFPSFPAG
60 70 80 90 100 110
250 260 270 280 290 300
pF1KB8 SADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPEKDSL
. : : :. : :: : : . . ..: . .. .: .. ::: :.:
NP_008 GRHYALKP---DAYPGRRADCGPGEGRSYPDYMYGSPGELRDRAP----QTLPSPEADAL
120 130 140 150 160
310 320 330 340 350
pF1KB8 GNSKGEN----------AANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEI
..:: .. .:::. :.: :::::::::.:::::::::::::::::.:: :.
NP_008 AGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEV
170 180 190 200 210 220
360 370 380 390
pF1KB8 SRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS
.: ..::.:::::::::::::.::::.:. .:
NP_008 ARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS
230 240 250 260
>>NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [Homo (352 aa)
initn: 543 init1: 389 opt: 423 Z-score: 209.0 bits: 47.3 E(85289): 6.6e-05
Smith-Waterman score: 514; 37.1% identity (55.3% similar) in 313 aa overlap (115-380:39-346)
90 100 110 120 130 140
pF1KB8 GLGPGAHGYGPSPIDLWLDAPRSCRMEPPDGPPPPPQQQPPP--PPQPPQPAPQATSCSF
::: : : : : : . .::::
NP_055 LKMSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGPAATAAEFASCSF
10 20 30 40 50 60
150 160 170 180 190 200
pF1KB8 AQNIKEESSYCLYDSADKCPKVSATAAELAPF--PRGPPPDGCALGTSSGVPVPGYFRLS
: : . : . :. .:: .. . : ::: : .. : : ....
NP_055 APR-----SAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWMEPL
70 80 90 100 110 120
210 220 230 240
pF1KB8 QAY-GTAKGYGSGGGGAQQLGAGPFPAQPP-GRGFDL-P-------PALASG--------
.. : : : :.::::. : .: :. : :: . . : :: :..
NP_055 PGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTS
130 140 150 160 170 180
250 260 270 280
pF1KB8 -SADAARKE----RALDSPPPPTLAC-------------GSGGGSQ-GDEEAHASSSAAE
:... : : : .. : ..: :.: :. : . ..::
NP_055 LSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPS
190 200 210 220 230 240
290 300 310 320 330
pF1KB8 ELS--PAPSESSKASPEKDSLGNSK----GENAANWLTAKSGRKKRCPYTKHQTLELEKE
: : :. : : .. : ... .. ::::. :.: :::::::::.::::::::
NP_055 ACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKE
250 260 270 280 290 300
340 350 360 370 380 390
pF1KB8 FLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS
:::::::::.:: :..: ..::.:::::::::::::.:::..:
NP_055 FLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD
310 320 330 340 350
>>NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [Homo (250 aa)
initn: 431 init1: 390 opt: 416 Z-score: 207.8 bits: 46.6 E(85289): 7.8e-05
Smith-Waterman score: 416; 47.8% identity (68.6% similar) in 159 aa overlap (227-380:100-246)
200 210 220 230 240 250
pF1KB8 FRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRGFDLPPALASGSADAARKERALDSP
.: :: : :...:: : . : .
NP_076 ASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAP-----GQGQAAVKAEPLLGA
70 80 90 100 110 120
260 270 280 290 300 310
pF1KB8 PPPTLACGSGGGSQGDEEAHASSSAAEE--LS---PAPSESSKASPEKDSLGNSKGENAA
: : .:: : .::..: :: :. .... .:. .. . .:
NP_076 PGELL-------KQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSA
130 140 150 160 170
320 330 340 350 360 370
pF1KB8 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRR
::: :.:.:::::::::.:::::::::::::::::.:: :..: ..:..:::::::::::
NP_076 NWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRR
180 190 200 210 220 230
380 390
pF1KB8 MKLKKMNRENRIRELTANFNFS
::.::::.:
NP_076 MKMKKMNKEQGKE
240 250
>>NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [Homo (272 aa)
initn: 463 init1: 397 opt: 414 Z-score: 206.5 bits: 46.5 E(85289): 9.2e-05
Smith-Waterman score: 431; 48.8% identity (66.0% similar) in 162 aa overlap (220-380:117-267)
190 200 210 220 230 240
pF1KB8 GVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRGFDLPPA-LASGSADAAR
:: : . : .: . . : :.. .:
NP_689 HHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPT
90 100 110 120 130 140
250 260 270 280 290 300
pF1KB8 KERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPEKDSLGNSKGE
. : :::: :.: . : .: : . : .::. .: : ..
NP_689 LDTHTLSLT--DYACGS---PPVDREKQPSEGAFSE-NNAENESGGDKPPIDP-----NN
150 160 170 180 190
310 320 330 340 350 360
pF1KB8 NAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQ
::::: :.: :::::::::::::::::::::::::::.:: :..: ..::.::::::::
NP_689 PAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQ
200 210 220 230 240 250
370 380 390
pF1KB8 NRRMKLKKMNRENRIRELTANFNFS
:::::.::.:..
NP_689 NRRMKMKKINKDRAKDE
260 270
>>NP_067015 (OMIM: 142986) homeobox protein Hox-D11 [Hom (338 aa)
initn: 492 init1: 314 opt: 400 Z-score: 199.4 bits: 45.5 E(85289): 0.00023
Smith-Waterman score: 416; 33.6% identity (50.8% similar) in 354 aa overlap (56-389:66-335)
30 40 50 60 70 80
pF1KB8 GGGGGGAGGGGGGGYYAHGGVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGG-G
:::. .: :: . .:. ::.::: :
NP_067 SQPSSCQMTFPYSSNLAPHVQPVREVAFRDYGLERAK-WPYRGGGGGGSAGGGSSGGGPG
40 50 60 70 80 90
90 100 110 120 130
pF1KB8 GLGPGAHGYGP---------SPIDLWLDAPRSCRMEPPDGPPPPPQQQPPPP----PQPP
: : :: ::.: . .: . .. :: : : . : : : ::
NP_067 GGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPP
100 110 120 130 140 150
140 150 160 170 180
pF1KB8 QPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPF--PRGPPPDGCALGTSS
. .: ... .: . . ... : .. :. . :: :: :. :::
NP_067 H-GPAGAASNFYSAVGRNG--ILPQGFDQFYE----AAPGPPFAGPQPPPP---------
160 170 180 190
190 200 210 220 230 240
pF1KB8 GVPVPGYFRLSQAYGTA-KG---YGSGGGGAQQLGAGPFPAQPPGRGFDLPPALASGSAD
:.: : :.: :: :.::::.. : :: . : . : ::.
NP_067 --PAP-----PQPEGAADKGDPRTGAGGGGGS-----PCTKATPG---SEPKGAAEGSG-
200 210 220 230 240
250 260 270 280 290 300
pF1KB8 AARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPEKDSLGNS
:.: : :. :. ::::. ::..:
NP_067 ------------------GDGEGPPGEAGAEKSSSAV-----APQRS-------------
250 260
310 320 330 340 350 360
pF1KB8 KGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKI
:::::::::.: :::.::.::.:...:.::..:: ..::::::::
NP_067 --------------RKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKI
270 280 290 300 310
370 380 390
pF1KB8 WFQNRRMKLKKMNRENRIRELTANFNFS
:::::::: ::.::. :.. .:.:
NP_067 WFQNRRMKEKKLNRD-RLQYFTGNPLF
320 330
>>NP_005514 (OMIM: 142958,605432) homeobox protein Hox-A (313 aa)
initn: 375 init1: 307 opt: 372 Z-score: 187.8 bits: 43.2 E(85289): 0.001
Smith-Waterman score: 413; 33.4% identity (58.3% similar) in 326 aa overlap (94-389:7-310)
70 80 90 100 110 120
pF1KB8 FPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWLDAPRSCRMEPPDGPPPP--PQ
:: ...: : :: . .:: :.
NP_005 MDFDERGPCSSNMYL--P-SCTYYV-SGPDFSSLPS
10 20 30
130 140 150 160 170
pF1KB8 QQPPPPPQPPQPAPQATSCSFAQNIKEES--SYCLYDSADKCPKVSA----TAAEL----
: : . :. ... .: ..: . : . .. :. . .: ::
NP_005 FLPQTPSSRPMTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSAEELVHRD
40 50 60 70 80 90
180 190 200 210
pF1KB8 ---APFPRGPPPDGCALGTSSGV---PVPG----YFR-------LSQAYGTAKGYGSGGG
:: : : : : .:..: :.:. .. : ::. . . .. :
NP_005 CLQAPSAAGVPGDVLA-KSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFD--QFFETAYG
100 110 120 130 140
220 230 240 250 260 270
pF1KB8 GAQQLGAGPFPAQPPG-RGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDE
..:... .:.. . .: ::: .. :: :: : . : : . ::::. : .
NP_005 TPENLASSDYPGDKSAEKG---PPAATATSAAAA----AAATGAPATSSSDSGGGG-GCR
150 160 170 180 190 200
280 290 300 310 320 330
pF1KB8 EAHASSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLE
: ...:::: :..:::..: :.. :. :. ... :::::::::.: :
NP_005 E---TAAAAEEKERRRRPESSSSPESSS-GHT--EDKAGGSSGQRTRKKRCPYTKYQIRE
210 220 230 240 250
340 350 360 370 380 390
pF1KB8 LEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS
::.::.:..:...:.::..:: ..:::::::::::::::: ::.::. :.. .::
NP_005 LEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRD-RLQYYSANPLL
260 270 280 290 300 310
>>NP_055027 (OMIM: 605559) homeobox protein Hox-C11 [Hom (304 aa)
initn: 376 init1: 310 opt: 362 Z-score: 183.7 bits: 42.4 E(85289): 0.0017
Smith-Waterman score: 362; 43.5% identity (73.2% similar) in 138 aa overlap (257-389:165-301)
230 240 250 260 270 280
pF1KB8 QPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASS---SAAE
:: :.. : ..:. :: .: : ::
NP_055 AGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGEPEAPPASGLASRAE
140 150 160 170 180 190
290 300 310 320 330 340
pF1KB8 ELSPAPSESSKASPEKDSLGNSKGENAANWLT--AKSGRKKRCPYTKHQTLELEKEFLFN
. : .: ...: ... ..: ... :. . : :::::::.: : :::.::.::
NP_055 AGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFN
200 210 220 230 240 250
350 360 370 380 390
pF1KB8 MYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS
.:...:.::..:: ..:::::::::::::::: ::..:. :.. ...:
NP_055 VYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRD-RLQYFSGNPLL
260 270 280 290 300
393 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:29:12 2016 done: Fri Nov 4 12:29:13 2016
Total Scan time: 9.650 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]