FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8389, 393 aa
  1>>>pF1KB8389 393 - 393 aa - 393 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9201+/-0.00103; mu= -2.7362+/- 0.063
 mean_var=512.2420+/-105.441, 0's: 0 Z-trim(118.3): 73  B-trim: 193 in 1/53
 Lambda= 0.056668
 statistics sampled from 19130 (19203) to 19130 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.84), E-opt: 0.2 (0.59), width:  16
 Scan time:  3.260

The best scores are:                                      opt bits E(32554)
CCDS5410.2 HOXA10 gene_id:3206|Hs108|chr7          ( 410) 2768 240.0 2.9e-63


>>CCDS5410.2 HOXA10 gene_id:3206|Hs108|chr7               (410 aa)
 initn: 2768 init1: 2768 opt: 2768  Z-score: 1249.3  bits: 240.0 E(32554): 2.9e-63
Smith-Waterman score: 2768; 100.0% identity (100.0% similar) in 393 aa overlap (1-393:18-410)

                                10        20        30        40   
pF1KB8                  MSCSESPAANSFLVDSLISSGRGEAGGGGGGAGGGGGGGYYAH
                        :::::::::::::::::::::::::::::::::::::::::::
CCDS54 MSARKGYLLPSPNYPTTMSCSESPAANSFLVDSLISSGRGEAGGGGGGAGGGGGGGYYAH
               10        20        30        40        50        60

            50        60        70        80        90       100   
pF1KB8 GGVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GGVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWLD
               70        80        90       100       110       120

           110       120       130       140       150       160   
pF1KB8 APRSCRMEPPDGPPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 APRSCRMEPPDGPPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPK
              130       140       150       160       170       180

           170       180       190       200       210       220   
pF1KB8 VSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGP
              190       200       210       220       230       240

           230       240       250       260       270       280   
pF1KB8 FPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAE
              250       260       270       280       290       300

           290       300       310       320       330       340   
pF1KB8 ELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMY
              310       320       330       340       350       360

           350       360       370       380       390   
pF1KB8 LTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS
              370       380       390       400       410




393 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:29:11 2016 done: Fri Nov  4 12:29:12 2016
 Total Scan time:  3.260 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]