FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8387, 568 aa
  1>>>pF1KB8387 568 - 568 aa - 568 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1090+/-0.00104; mu= 14.8555+/- 0.062
 mean_var=77.1922+/-15.382, 0's: 0 Z-trim(104.8): 15  B-trim: 65 in 1/48
 Lambda= 0.145978
 statistics sampled from 8082 (8088) to 8082 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.248), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS3465.1 SLC30A9 gene_id:10463|Hs108|chr4        ( 568) 3698 788.7       0


>>CCDS3465.1 SLC30A9 gene_id:10463|Hs108|chr4             (568 aa)
 initn: 3698 init1: 3698 opt: 3698  Z-score: 4208.9  bits: 788.7 E(32554):    0
Smith-Waterman score: 3698; 99.6% identity (100.0% similar) in 568 aa overlap (1-568:1-568)

               10        20        30        40        50        60
pF1KB8 MLPGLAAAAAHRCSWSSLCRLRLRCRAAACNPSDRQEWQNLVTFGSFSNVVPCSHPYIGT
       :::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
CCDS34 MLPGLAAAAAHRCSWSSLCRLRLRCRAAACNPSDRQEWQNLVTFGSFSNMVPCSHPYIGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LSQVKLYSTNVQKEGQGSQTLRVEKVPSFETAEGIGAELKAPLKQEPLQVRVKAVLKKRE
       ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
CCDS34 LSQVKLYSTNVQKEGQGSQTLRVEKVPSFETAEGIGTELKAPLKQEPLQVRVKAVLKKRE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YGSKYTQNNFITGVRAINEFCLKSSDLEQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YGSKYTQNNFITGVRAINEFCLKSSDLEQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 WGSPEALAREKKLRKEAEIEYRERLFRNQKILREYRDFLGNTKPRSRTASVFFKGPGKVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 WGSPEALAREKKLRKEAEIEYRERLFRNQKILREYRDFLGNTKPRSRTASVFFKGPGKVV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 MVAICINGLNCFFKFLAWIYTGSASMFSEAIHSLSDTCNQGLLALGISKSVQTPDPSHPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MVAICINGLNCFFKFLAWIYTGSASMFSEAIHSLSDTCNQGLLALGISKSVQTPDPSHPY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 GFSNMRYISSLISGVGIFMMGAGLSWYHGVMGLLHPQPIESLLWAYCILAGSLVSEGATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GFSNMRYISSLISGVGIFMMGAGLSWYHGVMGLLHPQPIESLLWAYCILAGSLVSEGATL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 LVAVNELRRNARAKGMSFYKYVMESRDPSTNVILLEDTAAVLGVIIAATCMGLTSITGNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LVAVNELRRNARAKGMSFYKYVMESRDPSTNVILLEDTAAVLGVIIAATCMGLTSITGNP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 LYDSLGSLGVGTLLGMVSAFLIYTNTEALLGRSIQPEQVQRLTELLENDPSVRAIHDVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LYDSLGSLGVGTLLGMVSAFLIYTNTEALLGRSIQPEQVQRLTELLENDPSVRAIHDVKA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 TDLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEELETFMLKHGENIID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TDLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEELETFMLKHGENIID
              490       500       510       520       530       540

              550       560        
pF1KB8 TLGAEVDRLEKELKKRNPEVRHVDLEIL
       ::::::::::::::::::::::::::::
CCDS34 TLGAEVDRLEKELKKRNPEVRHVDLEIL
              550       560        




568 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:27:57 2016 done: Fri Nov  4 12:27:58 2016
 Total Scan time:  2.180 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]