Result of FASTA (ccds) for
pF1KB8385
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8385, 423 aa
1>>>pF1KB8385 423 - 423 aa - 423 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6559+/-0.000934; mu= 10.8992+/- 0.057
mean_var=246.3734+/-50.231, 0's: 0 Z-trim(114.7): 118 B-trim: 118 in 1/51
Lambda= 0.081710
statistics sampled from 15116 (15237) to 15116 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.468), width: 16
Scan time: 3.440
The best scores are: opt bits E(32554)
CCDS4068.1 NR2F1 gene_id:7025|Hs108|chr5 ( 423) 2937 358.9 5.5e-99
CCDS10375.1 NR2F2 gene_id:7026|Hs108|chr15 ( 414) 2459 302.5 5e-82
CCDS45358.1 NR2F2 gene_id:7026|Hs108|chr15 ( 281) 1713 214.3 1.2e-55
CCDS45359.1 NR2F2 gene_id:7026|Hs108|chr15 ( 261) 1672 209.5 3.1e-54
CCDS12352.1 NR2F6 gene_id:2063|Hs108|chr19 ( 404) 1243 159.1 6.9e-39
CCDS1248.1 RXRG gene_id:6258|Hs108|chr1 ( 463) 976 127.7 2.2e-29
CCDS4768.1 RXRB gene_id:6257|Hs108|chr6 ( 533) 976 127.8 2.5e-29
CCDS35172.1 RXRA gene_id:6256|Hs108|chr9 ( 462) 972 127.3 3.1e-29
CCDS59007.1 RXRB gene_id:6257|Hs108|chr6 ( 537) 973 127.5 3.2e-29
CCDS72970.1 RXRG gene_id:6258|Hs108|chr1 ( 340) 953 124.9 1.2e-28
CCDS74728.1 HNF4A gene_id:3172|Hs108|chr20 ( 449) 796 106.5 5.4e-23
CCDS46605.1 HNF4A gene_id:3172|Hs108|chr20 ( 464) 786 105.3 1.2e-22
CCDS13330.1 HNF4A gene_id:3172|Hs108|chr20 ( 474) 786 105.4 1.3e-22
CCDS46604.1 HNF4A gene_id:3172|Hs108|chr20 ( 442) 785 105.2 1.3e-22
CCDS42876.1 HNF4A gene_id:3172|Hs108|chr20 ( 452) 785 105.2 1.3e-22
CCDS13331.1 HNF4A gene_id:3172|Hs108|chr20 ( 417) 774 103.9 3.1e-22
CCDS68131.1 HNF4A gene_id:3172|Hs108|chr20 ( 395) 773 103.7 3.3e-22
CCDS83303.1 HNF4G gene_id:3174|Hs108|chr8 ( 408) 764 102.7 6.9e-22
CCDS6220.2 HNF4G gene_id:3174|Hs108|chr8 ( 445) 764 102.7 7.3e-22
CCDS9850.2 ESRRB gene_id:2103|Hs108|chr14 ( 508) 675 92.3 1.1e-18
CCDS1517.1 ESRRG gene_id:2104|Hs108|chr1 ( 435) 672 91.9 1.3e-18
CCDS41468.1 ESRRG gene_id:2104|Hs108|chr1 ( 458) 672 91.9 1.4e-18
CCDS8818.1 NR4A1 gene_id:3164|Hs108|chr12 ( 598) 644 88.7 1.6e-17
CCDS55828.1 NR4A1 gene_id:3164|Hs108|chr12 ( 611) 644 88.7 1.6e-17
CCDS73471.1 NR4A1 gene_id:3164|Hs108|chr12 ( 652) 644 88.8 1.7e-17
CCDS8850.1 RARG gene_id:5916|Hs108|chr12 ( 454) 599 83.3 5.3e-16
CCDS73750.1 NR2E3 gene_id:10002|Hs108|chr15 ( 410) 596 82.9 6.4e-16
CCDS41790.1 RARG gene_id:5916|Hs108|chr12 ( 443) 594 82.7 7.9e-16
CCDS58236.1 RARG gene_id:5916|Hs108|chr12 ( 382) 583 81.3 1.8e-15
CCDS11366.1 RARA gene_id:5914|Hs108|chr17 ( 462) 572 80.1 4.9e-15
CCDS2642.1 RARB gene_id:5915|Hs108|chr3 ( 448) 567 79.5 7.2e-15
CCDS42317.1 RARA gene_id:5914|Hs108|chr17 ( 457) 567 79.5 7.3e-15
CCDS5063.1 NR2E1 gene_id:7101|Hs108|chr6 ( 385) 552 77.7 2.2e-14
CCDS69165.1 NR2E1 gene_id:7101|Hs108|chr6 ( 422) 552 77.7 2.4e-14
CCDS2201.1 NR4A2 gene_id:4929|Hs108|chr2 ( 598) 527 74.9 2.3e-13
CCDS58237.1 RARG gene_id:5916|Hs108|chr12 ( 432) 468 67.8 2.3e-11
CCDS6743.1 NR4A3 gene_id:8013|Hs108|chr9 ( 626) 457 66.7 7.1e-11
CCDS6742.1 NR4A3 gene_id:8013|Hs108|chr9 ( 637) 457 66.7 7.2e-11
>>CCDS4068.1 NR2F1 gene_id:7025|Hs108|chr5 (423 aa)
initn: 2937 init1: 2937 opt: 2937 Z-score: 1890.6 bits: 358.9 E(32554): 5.5e-99
Smith-Waterman score: 2937; 100.0% identity (100.0% similar) in 423 aa overlap (1-423:1-423)
10 20 30 40 50 60
pF1KB8 MAMVVSSWRDPQDDVAGGNPGGPNPAAQAARGGGGGAGEQQQQAGSGAPHTPQTPGQPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MAMVVSSWRDPQDDVAGGNPGGPNPAAQAARGGGGGAGEQQQQAGSGAPHTPQTPGQPGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PATPGTAGDKGQGPPGSGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 PATPGTAGDKGQGPPGSGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 TCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 GHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 PDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 PDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 IFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 IFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 PNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 PNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMSI
370 380 390 400 410 420
pF1KB8 QCS
:::
CCDS40 QCS
>>CCDS10375.1 NR2F2 gene_id:7026|Hs108|chr15 (414 aa)
initn: 2271 init1: 2271 opt: 2459 Z-score: 1586.2 bits: 302.5 E(32554): 5e-82
Smith-Waterman score: 2459; 85.9% identity (90.8% similar) in 426 aa overlap (1-421:1-414)
10 20 30 40 50 60
pF1KB8 MAMVVSSWRDPQDDVAGGNPGGPNPAAQAARGGGGGAGEQQQQAGSGAPHTPQTPGQPGA
::::::.::::::.: ::. . :. : : ::::::::::: :
CCDS10 MAMVVSTWRDPQDEV----PGSQGSQASQAPPVPGPP--------PGAPHTPQTPGQGGP
10 20 30 40
70 80 90 100 110
pF1KB8 PATPGTAGDKGQGPPGSG-----QSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVR
.::. .. ::: ::. :.:::::::::::::::::::::::::::::::::::
CCDS10 ASTPAQTAAGGQGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVR
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPNPGQYALTN
:::.:::::::::::::::::::::::::::::::::::::::::::::::. ::.::::
CCDS10 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTN
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 GDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWAR
::::: : :::::::::::::::::::.::::::::::::::::::::::.:::::::::
CCDS10 GDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWAR
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB8 NIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAF
::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAF
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB8 MDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEY
::::::::::::::::::::::::::::::::::::::::::.::.::::::::::::::
CCDS10 MDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEY
290 300 310 320 330 340
360 370 380 390 400 410
pF1KB8 VRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNW
:::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNW
350 360 370 380 390 400
420
pF1KB8 PYMSIQCS
:::.::
CCDS10 PYMAIQ
410
>>CCDS45358.1 NR2F2 gene_id:7026|Hs108|chr15 (281 aa)
initn: 1711 init1: 1711 opt: 1713 Z-score: 1112.8 bits: 214.3 E(32554): 1.2e-55
Smith-Waterman score: 1713; 93.5% identity (97.1% similar) in 275 aa overlap (147-421:7-281)
120 130 140 150 160 170
pF1KB8 NLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPNPGQYALTNG
:. : ::::::::::::. ::.:::::
CCDS45 MQAVWDLEQGKYGFAVQRGRMPPTQPTHGQFALTNG
10 20 30
180 190 200 210 220 230
pF1KB8 DPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARN
:::: : :::::::::::::::::::.::::::::::::::::::::::.::::::::::
CCDS45 DPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARN
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB8 IPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFM
:::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFM
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB8 DHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYV
:::::::::::::::::::::::::::::::::::::::::.::.:::::::::::::::
CCDS45 DHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYV
160 170 180 190 200 210
360 370 380 390 400 410
pF1KB8 RSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWP
::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWP
220 230 240 250 260 270
420
pF1KB8 YMSIQCS
::.::
CCDS45 YMAIQ
280
>>CCDS45359.1 NR2F2 gene_id:7026|Hs108|chr15 (261 aa)
initn: 1672 init1: 1672 opt: 1672 Z-score: 1087.1 bits: 209.5 E(32554): 3.1e-54
Smith-Waterman score: 1672; 95.4% identity (98.9% similar) in 261 aa overlap (161-421:1-261)
140 150 160 170 180 190
pF1KB8 DQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYIS
::::::. ::.::::::::: : :::::::
CCDS45 MPPTQPTHGQFALTNGDPLNCHSYLSGYIS
10 20 30
200 210 220 230 240 250
pF1KB8 LLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVS
::::::::::::.::::::::::::::::::::::.:::::::::::::::::::::::.
CCDS45 LLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVA
40 50 60 70 80 90
260 270 280 290 300 310
pF1KB8 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK
100 110 120 130 140 150
320 330 340 350 360 370
pF1KB8 ALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKL
:::::::::::::::::::::::::::.::.:::::::::::::::::::::::.:::::
CCDS45 ALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKL
160 170 180 190 200 210
380 390 400 410 420
pF1KB8 LLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS
::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS45 LLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ
220 230 240 250 260
>>CCDS12352.1 NR2F6 gene_id:2063|Hs108|chr19 (404 aa)
initn: 1698 init1: 1089 opt: 1243 Z-score: 811.6 bits: 159.1 E(32554): 6.9e-39
Smith-Waterman score: 1713; 64.2% identity (82.0% similar) in 405 aa overlap (32-421:9-404)
10 20 30 40 50
pF1KB8 AMVVSSWRDPQDDVAGGNPGGPNPAAQAARGGGGGAGEQQQQAGSGAPHTPQ--TPGQPG
:: :: . ..:: : :.. . . . ::
CCDS12 MAMVTGGWGGPGGDTNGVDKAG-GYPRAAEDDSASPPG
10 20 30
60 70 80 90 100 110
pF1KB8 APATPGTAGDKGQGPPGSGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLT
: :. . ::. . :: ...:::::::::::::: :::::::::::::.::::.
CCDS12 A-ASDAEPGDEER--PG-----LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLS
40 50 60 70 80
120 130 140 150 160 170
pF1KB8 YTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPN---------PGQ
::::.::.: :::::::::::::::::..::::.:::::::.: . :. ::.
CCDS12 YTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPHSLPGAVAASSGSPPGS
90 100 110 120 130 140
180 190 200 210 220
pF1KB8 Y--ALTNGDPLNGHCYLSGYISLLLRAEPYPTS--RYGSQCMQPNNIMGIENICELAARL
:...: : .: :. ::::::::.. :.:. . ..::.:.:::::::
CCDS12 ALAAVASGGDLFPGQPVSELIAQLLRAEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARL
150 160 170 180 190 200
230 240 250 260 270 280
pF1KB8 LFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASP
:::.:::::. ::::.: ..:::.::::.::::::::::: ..:::.:::::::::::.:
CCDS12 LFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAP
210 220 230 240 250 260
290 300 310 320 330 340
pF1KB8 MSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQE
:.:.:.:::::..: :::::.:: :.::::::.:::::.::: ::::::: ::.:::::
CCDS12 MAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQE
270 280 290 300 310 320
350 360 370 380 390 400
pF1KB8 KSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM
:.: :: ::::.:::.::.:::.::::::.::.: .:.: ::::.:::::::::::::::
CCDS12 KAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM
330 340 350 360 370 380
410 420
pF1KB8 LLSGSSFNWPYMSIQCS
:::::.::::: : :
CCDS12 LLSGSTFNWPYGSGQ
390 400
>>CCDS1248.1 RXRG gene_id:6258|Hs108|chr1 (463 aa)
initn: 793 init1: 392 opt: 976 Z-score: 640.8 bits: 127.7 E(32554): 2.2e-29
Smith-Waterman score: 976; 40.0% identity (67.3% similar) in 413 aa overlap (11-407:53-456)
10 20 30
pF1KB8 MAMVVSSWRDPQDDVAGGNP----GGPNPAAQAARGGGGG
:. : :.: :.: . .: : .:
CCDS12 GSTSMSPSAALSTGKPMDSHPSYTDTPVSAPRTLSAVGTPLNALGSPYRVITSAMGPPSG
30 40 50 60 70 80
40 50 60 70 80
pF1KB8 AGEQQQQAGSGAPHTPQ------TPGQPGAPATPGTAGDKGQGPPGS--GQSQQHIECVV
: . :: . : . .. :: : ... :.. :. .:: :..
CCDS12 ALAAPPGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHI-CAI
90 100 110 120 130 140
90 100 110 120 130 140
pF1KB8 CGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLK
:::.::::::: ..:::::.::::..:..: :::: :..: ::...::.::::: .:::
CCDS12 CGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLV
150 160 170 180 190 200
150 160 170 180 190 200
pF1KB8 VGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQ
.::.::::: : : . .. : .. . . . : . ... :: : ::..
CCDS12 MGMKREAVQEERQRSRERAESEAECATSGHEDMPVERILEAELAV----EP-KTESYGDM
210 220 230 240 250
210 220 230 240 250 260
pF1KB8 CMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQ
:. .. . :::. : . ::. ::::. :: : :: . ::: ::: :.::.. . ..
CCDS12 NMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH
260 270 280 290 300 310
270 280 290 300 310 320
pF1KB8 CSMPLHVAPLLAAAGLHASPMSADR--VVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA
:. .. . :::. :::. :: : ...: :.. : : :.: ...:..: .::.:
CCDS12 RSVSVQDGILLAT-GLHVHRSSAHSAGVGSIFD--RVLTELVSKMKDMQMDKSELGCLRA
320 330 340 350 360 370
330 340 350 360 370 380
pF1KB8 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSV
::::. :: :::. ...:.:.:: .:: :....::.::.::.:::::::.::... .
CCDS12 IVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKC
380 390 400 410 420 430
390 400 410 420
pF1KB8 IEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS
.:.::: .:.: :::.:.. .::
CCDS12 LEHLFFFKLIGDTPIDTFLMEMLETPLQIT
440 450 460
>>CCDS4768.1 RXRB gene_id:6257|Hs108|chr6 (533 aa)
initn: 744 init1: 651 opt: 976 Z-score: 640.2 bits: 127.8 E(32554): 2.5e-29
Smith-Waterman score: 976; 39.6% identity (68.4% similar) in 396 aa overlap (18-407:141-526)
10 20 30 40
pF1KB8 MAMVVSSWRDPQDDVAGGNPGGPNPAAQAARGGGGGAGEQQQQAGSG
:.:: : :: : .: .. : .. .
CCDS47 PSLGGSGAPPPPPMPPPPLGSPFPVISSSMGSPGLPPPAPP---GFSGPVSSPQINSTVS
120 130 140 150 160
50 60 70 80 90 100
pF1KB8 APHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCGDKSSGKHYGQFTCEGCK
: . : . : . :. : . :::. . ... :..:::.::::::: ..:::::
CCDS47 LPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAGKRL-CAICGDRSSGKHYGVYSCEGCK
170 180 190 200 210 220
110 120 130 140 150 160
pF1KB8 SFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRM-PPTQP
.::::..:..:::.:: :..: .:...::.::::: .::: .::.:::::. :. .
CCDS47 GFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKD
230 240 250 260 270 280
170 180 190 200 210 220
pF1KB8 NPGQYALTNGDPLNGHCYLSGYISLLLRAEPY---PTSRYGSQCMQPNNIMGIENICELA
. :. : . . : . ... ... : . :: .::. . :::. :
CCDS47 GDGEGAGGAPEEMPVDRILEAELAVEQKSDQGVEGPGGTGGSGS-SPND--PVTNICQAA
290 300 310 320 330 340
230 240 250 260 270 280
pF1KB8 ARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLH
. ::. ::::. :: : .: . ::: ::: :.::.. . .. :. .. . :::. :::
CCDS47 DKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLAT-GLH
350 360 370 380 390 400
290 300 310 320 330 340
pF1KB8 ASPMSADR--VVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHI
. :: : :..: :.. : : :.. ...:..: .::.::.::. :: :::. ...
CCDS47 VHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEV
410 420 430 440 450 460
350 360 370 380 390 400
pF1KB8 ESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIET
: :.:: .:: : ...::.: .::.:::::::.::... . .:.::: .:.: :::.:
CCDS47 EVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDT
470 480 490 500 510 520
410 420
pF1KB8 LIRDMLLSGSSFNWPYMSIQCS
.. .::
CCDS47 FLMEMLEAPHQLA
530
>>CCDS35172.1 RXRA gene_id:6256|Hs108|chr9 (462 aa)
initn: 584 init1: 538 opt: 972 Z-score: 638.3 bits: 127.3 E(32554): 3.1e-29
Smith-Waterman score: 972; 42.1% identity (70.2% similar) in 373 aa overlap (46-407:89-455)
20 30 40 50 60
pF1KB8 AGGNPGGPNPAAQAARGGGGGAGEQQQQAGSGAPH--TPQTPGQPGAPATP--GTAG--D
.:.:. .:..: . . : : :
CCDS35 NGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK
60 70 80 90 100 110
70 80 90 100 110 120
pF1KB8 KGQGPPGSGQS-QQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNC
: :. : .:: :..:::.::::::: ..:::::.::::.::..:::::: :..:
CCDS35 VPAHPSGNMASFTKHI-CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDC
120 130 140 150 160 170
130 140 150 160 170 180
pF1KB8 PIDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPNPGQYALTNGDPLNGHCYLS
::...::.::::: .::: .::.::::: : : . : . . . .. . . :
CCDS35 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILE
180 190 200 210 220 230
190 200 210 220 230 240
pF1KB8 GYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQIT
. ... ..: : . .: . .::. . :::. : . ::. ::::. :: : .: .
CCDS35 AELAVEPKTETYVEANMGLNPSSPND--PVTNICQAADKQLFTLVEWAKRIPHFSELPLD
240 250 260 270 280 290
250 260 270 280 290 300
pF1KB8 DQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADR--VVAFMDHIRIFQE
::: ::: :.::.. . .. :. .. . :::. :::. :: : :..: :.. :
CCDS35 DQVILLRAGWNELLIASFSHRSIAVKDGILLAT-GLHVHRNSAHSAGVGAIFD--RVLTE
300 310 320 330 340 350
310 320 330 340 350 360
pF1KB8 QVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQP
: :.. ...:..: .::.:::::. :. :::. :..:.:.:: .:: : . .::.::
CCDS35 LVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQP
360 370 380 390 400 410
370 380 390 400 410 420
pF1KB8 SRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS
.::.:::::::.::... . .:.::: .:.: :::.:.. .::
CCDS35 GRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
420 430 440 450 460
>>CCDS59007.1 RXRB gene_id:6257|Hs108|chr6 (537 aa)
initn: 1021 init1: 426 opt: 973 Z-score: 638.2 bits: 127.5 E(32554): 3.2e-29
Smith-Waterman score: 973; 39.4% identity (68.3% similar) in 398 aa overlap (18-407:141-530)
10 20 30 40
pF1KB8 MAMVVSSWRDPQDDVAGGNPGGPNPAAQAARGGGGGAGEQQQQAGSG
:.:: : :: : .: .. : .. .
CCDS59 PSLGGSGAPPPPPMPPPPLGSPFPVISSSMGSPGLPPPAPP---GFSGPVSSPQINSTVS
120 130 140 150 160
50 60 70 80 90 100
pF1KB8 APHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCGDKSSGKHYGQFTCEGCK
: . : . : . :. : . :::. . ... :..:::.::::::: ..:::::
CCDS59 LPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAGKRL-CAICGDRSSGKHYGVYSCEGCK
170 180 190 200 210 220
110 120 130 140 150 160
pF1KB8 SFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRM-PPTQP
.::::..:..:::.:: :..: .:...::.::::: .::: .::.:::::. :. .
CCDS59 GFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKD
230 240 250 260 270 280
170 180 190 200 210 220
pF1KB8 NPGQYALTNGDPLNGHCYLSGYISLLLRAEPY---PTSRYGSQCMQPNNIMGIENICELA
. :. : . . : . ... ... : . :: .::. . :::. :
CCDS59 GDGEGAGGAPEEMPVDRILEAELAVEQKSDQGVEGPGGTGGSGS-SPND--PVTNICQAA
290 300 310 320 330 340
230 240 250 260 270 280
pF1KB8 ARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLH
. ::. ::::. :: : .: . ::: ::: :.::.. . .. :. .. . :::. :::
CCDS59 DKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLAT-GLH
350 360 370 380 390 400
290 300 310 320 330
pF1KB8 ASPMSADR--VVAFMDHI--RIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAA
. :: : :..:. :.. : : :.. ...:..: .::.::.::. :: :::. .
CCDS59 VHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS
410 420 430 440 450 460
340 350 360 370 380 390
pF1KB8 HIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPI
..: :.:: .:: : ...::.: .::.:::::::.::... . .:.::: .:.: :::
CCDS59 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI
470 480 490 500 510 520
400 410 420
pF1KB8 ETLIRDMLLSGSSFNWPYMSIQCS
.:.. .::
CCDS59 DTFLMEMLEAPHQLA
530
>>CCDS72970.1 RXRG gene_id:6258|Hs108|chr1 (340 aa)
initn: 793 init1: 392 opt: 953 Z-score: 627.7 bits: 124.9 E(32554): 1.2e-28
Smith-Waterman score: 953; 44.5% identity (73.0% similar) in 337 aa overlap (75-407:8-333)
50 60 70 80 90 100
pF1KB8 GSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCGDKSSGKHYGQFTCE
::: .:: :..:::.::::::: ..::
CCDS72 MNYPSTSPGS--LVKHI-CAICGDRSSGKHYGVYSCE
10 20 30
110 120 130 140 150 160
pF1KB8 GCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMP
:::.::::..:..: :::: :..: ::...::.::::: .::: .::.::::: : :
CCDS72 GCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSR
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB8 PTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICEL
. .. : .. . . . : . ... :: : ::.. :. .. . :::.
CCDS72 ERAESEAECATSGHEDMPVERILEAELAV----EP-KTESYGDMNMENSTNDPVTNICHA
100 110 120 130 140
230 240 250 260 270 280
pF1KB8 AARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGL
: . ::. ::::. :: : :: . ::: ::: :.::.. . .. :. .. . :::. ::
CCDS72 ADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLAT-GL
150 160 170 180 190 200
290 300 310 320 330 340
pF1KB8 HASPMSADR--VVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAH
:. :: : ...: :.. : : :.: ...:..: .::.:::::. :: :::. ..
CCDS72 HVHRSSAHSAGVGSIFD--RVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSE
210 220 230 240 250 260
350 360 370 380 390 400
pF1KB8 IESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIE
.:.:.:: .:: :....::.::.::.:::::::.::... . .:.::: .:.: :::.
CCDS72 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID
270 280 290 300 310 320
410 420
pF1KB8 TLIRDMLLSGSSFNWPYMSIQCS
:.. .::
CCDS72 TFLMEMLETPLQIT
330 340
423 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:27:12 2016 done: Fri Nov 4 12:27:13 2016
Total Scan time: 3.440 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]