Result of FASTA (ccds) for
pF1KB8370
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8370, 161 aa
1>>>pF1KB8370 161 - 161 aa - 161 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7221+/-0.00057; mu= 2.4646+/- 0.035
mean_var=132.3967+/-26.451, 0's: 0 Z-trim(117.5): 11 B-trim: 0 in 0/54
Lambda= 0.111464
statistics sampled from 18277 (18288) to 18277 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.858), E-opt: 0.2 (0.562), width: 16
Scan time: 2.270
The best scores are: opt bits E(32554)
CCDS42880.1 DBNDD2 gene_id:55861|Hs108|chr20 ( 161) 1080 183.3 5.6e-47
CCDS56193.1 DBNDD2 gene_id:55861|Hs108|chr20 ( 259) 1080 183.4 8.5e-47
CCDS56194.1 DBNDD2 gene_id:55861|Hs108|chr20 ( 263) 1080 183.4 8.6e-47
CCDS42881.1 DBNDD2 gene_id:55861|Hs108|chr20 ( 112) 645 113.3 4.7e-26
CCDS75404.1 DTNBP1 gene_id:84062|Hs108|chr6 ( 316) 344 65.1 4.3e-11
CCDS75405.1 DTNBP1 gene_id:84062|Hs108|chr6 ( 334) 344 65.1 4.5e-11
CCDS4534.1 DTNBP1 gene_id:84062|Hs108|chr6 ( 351) 344 65.1 4.7e-11
>>CCDS42880.1 DBNDD2 gene_id:55861|Hs108|chr20 (161 aa)
initn: 1080 init1: 1080 opt: 1080 Z-score: 956.9 bits: 183.3 E(32554): 5.6e-47
Smith-Waterman score: 1080; 99.4% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KB8 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGVDNHLEELSLPVPTSDRTTSRTSSSSS
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS42 TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSS
70 80 90 100 110 120
130 140 150 160
pF1KB8 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS
:::::::::::::::::::::::::::::::::::::::::
CCDS42 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS
130 140 150 160
>>CCDS56193.1 DBNDD2 gene_id:55861|Hs108|chr20 (259 aa)
initn: 1080 init1: 1080 opt: 1080 Z-score: 953.7 bits: 183.4 E(32554): 8.5e-47
Smith-Waterman score: 1080; 99.4% identity (100.0% similar) in 161 aa overlap (1-161:99-259)
10 20 30
pF1KB8 MDPNPRAALERQQLRLRERQKFFEDILQPE
::::::::::::::::::::::::::::::
CCDS56 QWGAPSPGPLCLLFRLCSCTCFAPLPAGADMDPNPRAALERQQLRLRERQKFFEDILQPE
70 80 90 100 110 120
40 50 60 70 80 90
pF1KB8 TEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQ
130 140 150 160 170 180
100 110 120 130 140 150
pF1KB8 SSGVDNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEER
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SSGMDNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEER
190 200 210 220 230 240
160
pF1KB8 GDGGAEPGACS
:::::::::::
CCDS56 GDGGAEPGACS
250
>>CCDS56194.1 DBNDD2 gene_id:55861|Hs108|chr20 (263 aa)
initn: 1080 init1: 1080 opt: 1080 Z-score: 953.6 bits: 183.4 E(32554): 8.6e-47
Smith-Waterman score: 1080; 99.4% identity (100.0% similar) in 161 aa overlap (1-161:103-263)
10 20 30
pF1KB8 MDPNPRAALERQQLRLRERQKFFEDILQPE
::::::::::::::::::::::::::::::
CCDS56 QWGAPSPGPLCLLFRLCSCTCFAPLPAGADMDPNPRAALERQQLRLRERQKFFEDILQPE
80 90 100 110 120 130
40 50 60 70 80 90
pF1KB8 TEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQ
140 150 160 170 180 190
100 110 120 130 140 150
pF1KB8 SSGVDNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEER
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SSGMDNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEER
200 210 220 230 240 250
160
pF1KB8 GDGGAEPGACS
:::::::::::
CCDS56 GDGGAEPGACS
260
>>CCDS42881.1 DBNDD2 gene_id:55861|Hs108|chr20 (112 aa)
initn: 637 init1: 637 opt: 645 Z-score: 581.2 bits: 113.3 E(32554): 4.7e-26
Smith-Waterman score: 645; 88.1% identity (91.7% similar) in 109 aa overlap (1-109:1-109)
10 20 30 40 50 60
pF1KB8 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGVDNHLEELSLPVPTSDRTTSRTSSSSS
:::::::::::::::::::::::::::::::::. . ..: : :
CCDS42 TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPDVRL
70 80 90 100 110
130 140 150 160
pF1KB8 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS
>>CCDS75404.1 DTNBP1 gene_id:84062|Hs108|chr6 (316 aa)
initn: 347 init1: 253 opt: 344 Z-score: 312.7 bits: 65.1 E(32554): 4.3e-11
Smith-Waterman score: 344; 42.6% identity (68.9% similar) in 148 aa overlap (12-152:153-294)
10 20 30 40
pF1KB8 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLH
::..:.:::::::. .: . : . ..:.
CCDS75 YKKNKRKELETFKAELDAEHAQKVLEMEHTQQMKLKERQKFFEEAFQQDMEQYLSTGYLQ
130 140 150 160 170 180
50 60 70 80 90
pF1KB8 LESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPC--ED-----PPPTPQSSGV
. .: ::::.:::::::: :::..:.:..: .: :::: :. : :.::
CCDS75 IAERREPIGSMSSMEVNVDMLEQMDLMDISDQEALDVFLNSGGEENTVLSPALGPESSTC
190 200 210 220 230 240
100 110 120 130 140 150
pF1KB8 DNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGG
.:.. :..: :. :. .:::. .::.: : .:...:..:::::: . :
CCDS75 QNEIT-LQVPNPSELRAKPPSSSSTCTDSATRDIS-----EGGESPVVQSDEEEVQVDTA
250 260 270 280 290
160
pF1KB8 AEPGACS
CCDS75 LATSHTDREATPDGGEDSDS
300 310
>>CCDS75405.1 DTNBP1 gene_id:84062|Hs108|chr6 (334 aa)
initn: 347 init1: 253 opt: 344 Z-score: 312.3 bits: 65.1 E(32554): 4.5e-11
Smith-Waterman score: 344; 42.6% identity (68.9% similar) in 148 aa overlap (12-152:171-312)
10 20 30 40
pF1KB8 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLH
::..:.:::::::. .: . : . ..:.
CCDS75 YKKNKRKELETFKAELDAEHAQKVLEMEHTQQMKLKERQKFFEEAFQQDMEQYLSTGYLQ
150 160 170 180 190 200
50 60 70 80 90
pF1KB8 LESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPC--ED-----PPPTPQSSGV
. .: ::::.:::::::: :::..:.:..: .: :::: :. : :.::
CCDS75 IAERREPIGSMSSMEVNVDMLEQMDLMDISDQEALDVFLNSGGEENTVLSPALGPESSTC
210 220 230 240 250 260
100 110 120 130 140 150
pF1KB8 DNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGG
.:.. :..: :. :. .:::. .::.: : .:...:..:::::: . :
CCDS75 QNEIT-LQVPNPSELRAKPPSSSSTCTDSATRDIS-----EGGESPVVQSDEEEVQVDTA
270 280 290 300 310
160
pF1KB8 AEPGACS
CCDS75 LATSHTDREATPDGGEDSDS
320 330
>>CCDS4534.1 DTNBP1 gene_id:84062|Hs108|chr6 (351 aa)
initn: 347 init1: 253 opt: 344 Z-score: 312.0 bits: 65.1 E(32554): 4.7e-11
Smith-Waterman score: 344; 42.6% identity (68.9% similar) in 148 aa overlap (12-152:188-329)
10 20 30 40
pF1KB8 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLH
::..:.:::::::. .: . : . ..:.
CCDS45 YKKNKRKELETFKAELDAEHAQKVLEMEHTQQMKLKERQKFFEEAFQQDMEQYLSTGYLQ
160 170 180 190 200 210
50 60 70 80 90
pF1KB8 LESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPC--ED-----PPPTPQSSGV
. .: ::::.:::::::: :::..:.:..: .: :::: :. : :.::
CCDS45 IAERREPIGSMSSMEVNVDMLEQMDLMDISDQEALDVFLNSGGEENTVLSPALGPESSTC
220 230 240 250 260 270
100 110 120 130 140 150
pF1KB8 DNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGG
.:.. :..: :. :. .:::. .::.: : .:...:..:::::: . :
CCDS45 QNEIT-LQVPNPSELRAKPPSSSSTCTDSATRDIS-----EGGESPVVQSDEEEVQVDTA
280 290 300 310 320 330
160
pF1KB8 AEPGACS
CCDS45 LATSHTDREATPDGGEDSDS
340 350
161 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:19:40 2016 done: Fri Nov 4 12:19:40 2016
Total Scan time: 2.270 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]