FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8369, 198 aa
  1>>>pF1KB8369 198 - 198 aa - 198 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8355+/-0.000658; mu= 8.8960+/- 0.040
 mean_var=131.6413+/-26.252, 0's: 0 Z-trim(115.5): 5  B-trim: 0 in 0/53
 Lambda= 0.111784
 statistics sampled from 16060 (16065) to 16060 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.818), E-opt: 0.2 (0.493), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS8653.1 CDKN1B gene_id:1027|Hs108|chr12         ( 198) 1367 230.3   6e-61


>>CCDS8653.1 CDKN1B gene_id:1027|Hs108|chr12              (198 aa)
 initn: 1367 init1: 1367 opt: 1367  Z-score: 1207.7  bits: 230.3 E(32554): 6e-61
Smith-Waterman score: 1367; 99.5% identity (99.5% similar) in 198 aa overlap (1-198:1-198)

               10        20        30        40        50        60
pF1KB8 MSNVRVSNGSPSLERMDARQAEHPKPSACRNLFGPVDHEELTRDLEKHCRDMEEASQRKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 MSNVRVSNGSPSLERMDARQAEHPKPSACRNLFGPVDHEELTRDLEKHCRDMEEASQRKW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NFDFQNHKPLEGKYEWQEVEKGSLPEFYYRPPRPPKGACKVPAQESQDGSGSRPAAPLIG
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS86 NFDFQNHKPLEGKYEWQEVEKGSLPEFYYRPPRPPKGACKVPAQESQDVSGSRPAAPLIG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 APANSEDTHLVDPKTDPSDSQTGLAEQCAGIRKRPATDDSSTQNKRANRTEENVSDGSPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 APANSEDTHLVDPKTDPSDSQTGLAEQCAGIRKRPATDDSSTQNKRANRTEENVSDGSPN
              130       140       150       160       170       180

              190        
pF1KB8 AGSVEQTPKKPGLRRRQT
       ::::::::::::::::::
CCDS86 AGSVEQTPKKPGLRRRQT
              190        




198 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:19:03 2016 done: Fri Nov  4 12:19:04 2016
 Total Scan time:  2.190 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]