Result of FASTA (ccds) for
pF1KB8367
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8367, 298 aa
1>>>pF1KB8367 298 - 298 aa - 298 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1424+/-0.00112; mu= 6.3417+/- 0.066
mean_var=150.3507+/-29.560, 0's: 0 Z-trim(106.2): 138 B-trim: 2 in 1/51
Lambda= 0.104598
statistics sampled from 8714 (8873) to 8714 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.273), width: 16
Scan time: 2.520
The best scores are: opt bits E(32554)
CCDS42911.1 JAM2 gene_id:58494|Hs108|chr21 ( 298) 1936 304.2 7.7e-83
CCDS58787.1 JAM2 gene_id:58494|Hs108|chr21 ( 312) 1870 294.3 8e-80
CCDS58788.1 JAM2 gene_id:58494|Hs108|chr21 ( 262) 1431 227.9 6.1e-60
CCDS8494.2 JAM3 gene_id:83700|Hs108|chr11 ( 310) 642 108.9 4.8e-24
CCDS1213.1 F11R gene_id:50848|Hs108|chr1 ( 299) 563 97.0 1.8e-20
CCDS55799.1 JAM3 gene_id:83700|Hs108|chr11 ( 259) 456 80.8 1.2e-15
>>CCDS42911.1 JAM2 gene_id:58494|Hs108|chr21 (298 aa)
initn: 1936 init1: 1936 opt: 1936 Z-score: 1600.7 bits: 304.2 E(32554): 7.7e-83
Smith-Waterman score: 1936; 100.0% identity (100.0% similar) in 298 aa overlap (1-298:1-298)
10 20 30 40 50 60
pF1KB8 MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LEWKKLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LEWKKLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGI
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 IAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENDFKHTKSFII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENDFKHTKSFII
250 260 270 280 290
>>CCDS58787.1 JAM2 gene_id:58494|Hs108|chr21 (312 aa)
initn: 1870 init1: 1870 opt: 1870 Z-score: 1546.6 bits: 294.3 E(32554): 8e-80
Smith-Waterman score: 1870; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)
10 20 30 40 50 60
pF1KB8 MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LEWKKLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LEWKKLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGI
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 IAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENDFKHTKSFII
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 IAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENVQWLTPVIPALW
250 260 270 280 290 300
CCDS58 KAAAGGSRGQEF
310
>>CCDS58788.1 JAM2 gene_id:58494|Hs108|chr21 (262 aa)
initn: 1431 init1: 1431 opt: 1431 Z-score: 1189.6 bits: 227.9 E(32554): 6.1e-60
Smith-Waterman score: 1622; 87.9% identity (87.9% similar) in 298 aa overlap (1-298:1-262)
10 20 30 40 50 60
pF1KB8 MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSR
::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQ----------------
10 20 30 40
70 80 90 100 110 120
pF1KB8 LEWKKLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQN
::::::::::::::::::::::::::::::::::::::::
CCDS58 --------------------GDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQN
50 60 70 80
130 140 150 160 170 180
pF1KB8 LEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPR
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB8 LGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGI
150 160 170 180 190 200
250 260 270 280 290
pF1KB8 IAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENDFKHTKSFII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 IAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENDFKHTKSFII
210 220 230 240 250 260
>>CCDS8494.2 JAM3 gene_id:83700|Hs108|chr11 (310 aa)
initn: 551 init1: 436 opt: 642 Z-score: 545.1 bits: 108.9 E(32554): 4.8e-24
Smith-Waterman score: 642; 36.7% identity (70.3% similar) in 300 aa overlap (9-298:19-310)
10 20 30 40 50
pF1KB8 MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILAC
.::::.: ... : .... . :: :.. . :.:
CCDS84 MALRRPPRLRLCARLPDFFLLLLFRGCLIG-----AVNLKSSNRTPVVQ--EFESVELSC
10 20 30 40 50
60 70 80 90 100
pF1KB8 K-TPKKTVSSRLEWKKL-GRSVSFVYYQQTLQGDFKNRAEMID-FNIRIKNVTRSDAGKY
: ..: . :.::::. .....:.... .:::. .:::.. ...: :::: :.. :
CCDS84 IITDSQTSDPRIEWKKIQDEQTTYVFFDNKIQGDLAGRAEILGKTSLKIWNVTRRDSALY
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 RCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYT
:::: : ... ....: .. : : : :..: :.::... : .. :.::..::.: :.:.
CCDS84 RCEVVARNDR-KEIDEIVIELTVQVKPVTPVCRVPKAVPVGKMATLHCQESEGHPRPHYS
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 WFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPG
:... . : . : . . :::. .:..:::: :..: : :.:.: : : :..: ::
CCDS84 WYRNDVPLPTDSRANPRFRNSSFHLNSETGTLVFTAVHKDDSGQYYCIASNDAGSARCEE
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 KRMQVDDLNISGIIAAVVVVALVISVCGLGVCYAQRKGYF--SKET--SFQ---KSNSSS
..:.: ::::.:::..:.:: :... ::.: : :.::: .:. :.. : .. .
CCDS84 QEMEVYDLNIGGIIGGVLVVLAVLALITLGICCAYRRGYFINNKQDGESYKNPGKPDGVN
240 250 260 270 280 290
290
pF1KB8 KATTMSENDFKHTKSFII
: :.::.: .::.:
CCDS84 YIRTDEEGDFRHKSSFVI
300 310
>>CCDS1213.1 F11R gene_id:50848|Hs108|chr1 (299 aa)
initn: 417 init1: 319 opt: 563 Z-score: 480.9 bits: 97.0 E(32554): 1.8e-20
Smith-Waterman score: 563; 35.2% identity (64.5% similar) in 301 aa overlap (2-298:5-299)
10 20 30 40 50
pF1KB8 MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTV
:. :. : :..: :. .:. .. :. . : : . . :.: .
CCDS12 MGTKAQVERKLLCLFILAILLCSLALGSVTVHSSEPE---VRIPENNPVKLSCAYSGFS-
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 SSRLEWK-KLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSE
: :.::: : .. .: :.. . .....:. .. .: .:.::: :.: : : :: :
CCDS12 SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVS--EE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 QGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLL
:.. : : : ::: :. :. ..:::: :. . : :....:.: ::::::::: .
CCDS12 GGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 ENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGK-RMQVDDL
::. .::::..: :: : :. .: :::::::::::. : . ::.. .
CCDS12 TNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVER
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 NISGIIAAVVVVALVISVCGLGVCYAQRKGYF--SKETSFQKSNSSSKATTMSENDFKHT
:.. :.:::.:. ..... .:. .: .:.: .:. . .:. :. .. ::..::.:
CCDS12 NVGVIVAAVLVTLILLGILVFGIWFAYSRGHFDRTKKGTSSKKVIYSQPSARSEGEFKQT
240 250 260 270 280 290
pF1KB8 KSFII
.::..
CCDS12 SSFLV
>>CCDS55799.1 JAM3 gene_id:83700|Hs108|chr11 (259 aa)
initn: 478 init1: 421 opt: 456 Z-score: 394.5 bits: 80.8 E(32554): 1.2e-15
Smith-Waterman score: 456; 36.3% identity (69.2% similar) in 201 aa overlap (110-298:59-259)
80 90 100 110 120 130
pF1KB8 QGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTL-----EVLVAP
..: : . ...... .: .. : :
CCDS55 IGAVNLKSSNRTPVVQEFESVELSCIITDSQTSDPRIEWKKIQDEQTTYVFFDNKIQVKP
30 40 50 60 70 80
140 150 160 170 180 190
pF1KB8 AVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPRLGSQSTNSSYTMNT
..: :.::... : .. :.::..::.: :.:.:... . : . : . . :::. .:.
CCDS55 VTPVCRVPKAVPVGKMATLHCQESEGHPRPHYSWYRNDVPLPTDSRANPRFRNSSFHLNS
90 100 110 120 130 140
200 210 220 230 240 250
pF1KB8 KTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGIIAAVVVVALVISVC
.:::: :..: : :.:.: : : :..: :: ..:.: ::::.:::..:.:: :...
CCDS55 ETGTLVFTAVHKDDSGQYYCIASNDAGSARCEEQEMEVYDLNIGGIIGGVLVVLAVLALI
150 160 170 180 190 200
260 270 280 290
pF1KB8 GLGVCYAQRKGYF--SKET--SFQ---KSNSSSKATTMSENDFKHTKSFII
::.: : :.::: .:. :.. : .. . : :.::.: .::.:
CCDS55 TLGICCAYRRGYFINNKQDGESYKNPGKPDGVNYIRTDEEGDFRHKSSFVI
210 220 230 240 250
298 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:17:20 2016 done: Fri Nov 4 12:17:20 2016
Total Scan time: 2.520 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]