FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8366, 178 aa
  1>>>pF1KB8366 178 - 178 aa - 178 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8916+/-0.000664; mu= 15.7103+/- 0.040
 mean_var=78.9191+/-14.607, 0's: 0 Z-trim(112.1): 48  B-trim: 92 in 2/49
 Lambda= 0.144372
 statistics sampled from 12872 (12920) to 12872 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.397), width:  16
 Scan time:  2.100

The best scores are:                                      opt bits E(32554)
CCDS3566.1 BTC gene_id:685|Hs108|chr4              ( 178) 1220 262.7 8.7e-71


>>CCDS3566.1 BTC gene_id:685|Hs108|chr4                   (178 aa)
 initn: 1220 init1: 1220 opt: 1220  Z-score: 1384.3  bits: 262.7 E(32554): 8.7e-71
Smith-Waterman score: 1220; 99.4% identity (100.0% similar) in 178 aa overlap (1-178:1-178)

               10        20        30        40        50        60
pF1KB8 MDRAARCSGASSLPLLLALALGLVILHCVVADGNSTRSPETNGLLCGDPEENCAATTTQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MDRAARCSGASSLPLLLALALGLVILHCVVADGNSTRSPETNGLLCGDPEENCAATTTQS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KRKGHFSRCPKQYKHYCIKGRCRFVVAEQTPSCVCDEGYIGARCERVDLFYLRGDRGQIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KRKGHFSRCPKQYKHYCIKGRCRFVVAEQTPSCVCDEGYIGARCERVDLFYLRGDRGQIL
               70        80        90       100       110       120

              130       140       150       160       170        
pF1KB8 VICMIAVMVVFIILVIGVCTCCHPLRKRRKRKKKEEEMETLGKDITPINEDIEETNIA
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VICLIAVMVVFIILVIGVCTCCHPLRKRRKRKKKEEEMETLGKDITPINEDIEETNIA
              130       140       150       160       170        




178 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:16:45 2016 done: Fri Nov  4 12:16:46 2016
 Total Scan time:  2.100 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]