Result of FASTA (omim) for
pF1KB8359
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8359, 119 aa
1>>>pF1KB8359 119 - 119 aa - 119 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3224+/-0.000402; mu= 10.8224+/- 0.025
mean_var=73.5507+/-16.408, 0's: 0 Z-trim(111.8): 39 B-trim: 1399 in 1/53
Lambda= 0.149548
statistics sampled from 20421 (20451) to 20421 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.24), width: 16
Scan time: 2.350
The best scores are: opt bits E(85289)
NP_005523 (OMIM: 600009) interferon alpha-inducibl ( 119) 683 156.2 1.1e-38
NP_001275924 (OMIM: 600009) interferon alpha-induc ( 119) 683 156.2 1.1e-38
NP_001275883 (OMIM: 600009) interferon alpha-induc ( 119) 683 156.2 1.1e-38
NP_001275887 (OMIM: 600009) interferon alpha-induc ( 119) 683 156.2 1.1e-38
NP_001275886 (OMIM: 600009) interferon alpha-induc ( 119) 683 156.2 1.1e-38
NP_001275885 (OMIM: 600009) interferon alpha-induc ( 122) 667 152.8 1.3e-37
NP_001123552 (OMIM: 600009) interferon alpha-induc ( 122) 667 152.8 1.3e-37
NP_001275881 (OMIM: 600009) interferon alpha-induc ( 122) 667 152.8 1.3e-37
NP_001275888 (OMIM: 600009) interferon alpha-induc ( 79) 452 106.3 8.3e-24
NP_001275889 (OMIM: 600009) interferon alpha-induc ( 74) 431 101.7 1.8e-22
NP_114425 (OMIM: 611319) interferon alpha-inducibl ( 130) 340 82.2 2.3e-16
XP_011534709 (OMIM: 611320) PREDICTED: interferon ( 103) 312 76.1 1.3e-14
XP_011534708 (OMIM: 611320) PREDICTED: interferon ( 103) 312 76.1 1.3e-14
NP_996832 (OMIM: 611320) interferon alpha-inducibl ( 104) 312 76.1 1.3e-14
NP_660292 (OMIM: 611320) interferon alpha-inducibl ( 104) 312 76.1 1.3e-14
XP_011534707 (OMIM: 611320) PREDICTED: interferon ( 104) 312 76.1 1.3e-14
XP_016876450 (OMIM: 611320) PREDICTED: interferon ( 124) 312 76.2 1.5e-14
XP_005267371 (OMIM: 611320) PREDICTED: interferon ( 129) 312 76.2 1.5e-14
XP_016876451 (OMIM: 611320) PREDICTED: interferon ( 113) 289 71.2 4.2e-13
XP_016876452 (OMIM: 611320) PREDICTED: interferon ( 112) 260 64.9 3.2e-11
NP_002029 (OMIM: 147572) interferon alpha-inducibl ( 130) 231 58.7 2.8e-09
NP_075010 (OMIM: 147572) interferon alpha-inducibl ( 134) 231 58.7 2.8e-09
NP_075011 (OMIM: 147572) interferon alpha-inducibl ( 138) 231 58.7 2.9e-09
>>NP_005523 (OMIM: 600009) interferon alpha-inducible pr (119 aa)
initn: 683 init1: 683 opt: 683 Z-score: 815.2 bits: 156.2 E(85289): 1.1e-38
Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)
10 20 30 40 50 60
pF1KB8 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVAVPMVLSAMGFTAAGIAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVAVPMVLSAMGFTAAGIAS
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 SSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIARFY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIARFY
70 80 90 100 110
>>NP_001275924 (OMIM: 600009) interferon alpha-inducible (119 aa)
initn: 683 init1: 683 opt: 683 Z-score: 815.2 bits: 156.2 E(85289): 1.1e-38
Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)
10 20 30 40 50 60
pF1KB8 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVAVPMVLSAMGFTAAGIAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVAVPMVLSAMGFTAAGIAS
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 SSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIARFY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIARFY
70 80 90 100 110
>>NP_001275883 (OMIM: 600009) interferon alpha-inducible (119 aa)
initn: 683 init1: 683 opt: 683 Z-score: 815.2 bits: 156.2 E(85289): 1.1e-38
Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)
10 20 30 40 50 60
pF1KB8 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVAVPMVLSAMGFTAAGIAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVAVPMVLSAMGFTAAGIAS
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 SSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIARFY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIARFY
70 80 90 100 110
>>NP_001275887 (OMIM: 600009) interferon alpha-inducible (119 aa)
initn: 683 init1: 683 opt: 683 Z-score: 815.2 bits: 156.2 E(85289): 1.1e-38
Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)
10 20 30 40 50 60
pF1KB8 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVAVPMVLSAMGFTAAGIAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVAVPMVLSAMGFTAAGIAS
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 SSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIARFY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIARFY
70 80 90 100 110
>>NP_001275886 (OMIM: 600009) interferon alpha-inducible (119 aa)
initn: 683 init1: 683 opt: 683 Z-score: 815.2 bits: 156.2 E(85289): 1.1e-38
Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)
10 20 30 40 50 60
pF1KB8 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVAVPMVLSAMGFTAAGIAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVAVPMVLSAMGFTAAGIAS
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 SSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIARFY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIARFY
70 80 90 100 110
>>NP_001275885 (OMIM: 600009) interferon alpha-inducible (122 aa)
initn: 452 init1: 452 opt: 667 Z-score: 796.4 bits: 152.8 E(85289): 1.3e-37
Smith-Waterman score: 667; 97.5% identity (97.5% similar) in 122 aa overlap (1-119:1-122)
10 20 30 40 50
pF1KB8 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVA---VPMVLSAMGFTAAG
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
NP_001 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVAMAAVPMVLSAMGFTAAG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 IASSSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IASSSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIAR
70 80 90 100 110 120
pF1KB8 FY
::
NP_001 FY
>>NP_001123552 (OMIM: 600009) interferon alpha-inducible (122 aa)
initn: 452 init1: 452 opt: 667 Z-score: 796.4 bits: 152.8 E(85289): 1.3e-37
Smith-Waterman score: 667; 97.5% identity (97.5% similar) in 122 aa overlap (1-119:1-122)
10 20 30 40 50
pF1KB8 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVA---VPMVLSAMGFTAAG
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
NP_001 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVAMAAVPMVLSAMGFTAAG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 IASSSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IASSSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIAR
70 80 90 100 110 120
pF1KB8 FY
::
NP_001 FY
>>NP_001275881 (OMIM: 600009) interferon alpha-inducible (122 aa)
initn: 452 init1: 452 opt: 667 Z-score: 796.4 bits: 152.8 E(85289): 1.3e-37
Smith-Waterman score: 667; 97.5% identity (97.5% similar) in 122 aa overlap (1-119:1-122)
10 20 30 40 50
pF1KB8 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVA---VPMVLSAMGFTAAG
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
NP_001 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVAMAAVPMVLSAMGFTAAG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 IASSSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IASSSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIAR
70 80 90 100 110 120
pF1KB8 FY
::
NP_001 FY
>>NP_001275888 (OMIM: 600009) interferon alpha-inducible (79 aa)
initn: 452 init1: 452 opt: 452 Z-score: 548.4 bits: 106.3 E(85289): 8.3e-24
Smith-Waterman score: 452; 97.5% identity (100.0% similar) in 79 aa overlap (41-119:1-79)
20 30 40 50 60 70
pF1KB8 VTSVAKVVRVASGSAVVLPLARIATVVIGGVVAVPMVLSAMGFTAAGIASSSIAAKMMSA
..::::::::::::::::::::::::::::
NP_001 MAAVPMVLSAMGFTAAGIASSSIAAKMMSA
10 20 30
80 90 100 110
pF1KB8 AAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIARFY
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIARFY
40 50 60 70
>>NP_001275889 (OMIM: 600009) interferon alpha-inducible (74 aa)
initn: 431 init1: 431 opt: 431 Z-score: 524.4 bits: 101.7 E(85289): 1.8e-22
Smith-Waterman score: 431; 100.0% identity (100.0% similar) in 74 aa overlap (46-119:1-74)
20 30 40 50 60 70
pF1KB8 KVVRVASGSAVVLPLARIATVVIGGVVAVPMVLSAMGFTAAGIASSSIAAKMMSAAAIAN
::::::::::::::::::::::::::::::
NP_001 MVLSAMGFTAAGIASSSIAAKMMSAAAIAN
10 20 30
80 90 100 110
pF1KB8 GGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIARFY
::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIARFY
40 50 60 70
119 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:06:11 2016 done: Fri Nov 4 12:06:12 2016
Total Scan time: 2.350 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]