FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8359, 119 aa
  1>>>pF1KB8359 119 - 119 aa - 119 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7195+/-0.000904; mu= 8.4252+/- 0.054
 mean_var=68.3556+/-14.827, 0's: 0 Z-trim(105.5): 29  B-trim: 0 in 0/49
 Lambda= 0.155127
 statistics sampled from 8449 (8457) to 8449 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.26), width:  16
 Scan time:  1.360

The best scores are:                                      opt bits E(32554)
CCDS32148.1 IFI27 gene_id:3429|Hs108|chr14         ( 122)  667 157.8 1.4e-39
CCDS9920.1 IFI27L2 gene_id:83982|Hs108|chr14       ( 130)  340 84.7 1.6e-17
CCDS9919.1 IFI27L1 gene_id:122509|Hs108|chr14      ( 104)  312 78.4   1e-15


>>CCDS32148.1 IFI27 gene_id:3429|Hs108|chr14              (122 aa)
 initn: 452 init1: 452 opt: 667  Z-score: 823.8  bits: 157.8 E(32554): 1.4e-39
Smith-Waterman score: 667; 97.5% identity (97.5% similar) in 122 aa overlap (1-119:1-122)

               10        20        30        40           50       
pF1KB8 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVA---VPMVLSAMGFTAAG
       :::::::::::::::::::::::::::::::::::::::::::   ::::::::::::::
CCDS32 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVAMAAVPMVLSAMGFTAAG
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB8 IASSSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IASSSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIAR
               70        80        90       100       110       120

         
pF1KB8 FY
       ::
CCDS32 FY
         

>>CCDS9920.1 IFI27L2 gene_id:83982|Hs108|chr14            (130 aa)
 initn: 407 init1: 322 opt: 340  Z-score: 427.9  bits: 84.7 E(32554): 1.6e-17
Smith-Waterman score: 340; 64.0% identity (91.0% similar) in 89 aa overlap (30-115:2-90)

               10        20        30        40           50       
pF1KB8 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVAV---PMVLSAMGFTAAG
                                    . : :....::..::   :.::::::::.::
CCDS99                             MMKRAAAAAVGGALAVGAVPVVLSAMGFTGAG
                                           10        20        30  

        60        70        80        90       100       110       
pF1KB8 IASSSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIAR
       ::.:::::::::::::::::::..:::::::::.::.:::  ....:.:.::...: .  
CCDS99 IAASSIAAKMMSAAAIANGGGVSAGSLVATLQSVGAAGLSTSSNILLASVGSVLGACLGN
             40        50        60        70        80        90  

                                             
pF1KB8 FY                                    
                                             
CCDS99 SPSSSLPAEPEAKEDEARENVPQGEPPKPPLKSEKHEE
            100       110       120       130

>>CCDS9919.1 IFI27L1 gene_id:122509|Hs108|chr14           (104 aa)
 initn: 254 init1: 254 opt: 312  Z-score: 395.6  bits: 78.4 E(32554): 1e-15
Smith-Waterman score: 312; 68.6% identity (83.7% similar) in 86 aa overlap (31-113:12-96)

               10        20        30        40           50       
pF1KB8 MEASALTSSAVTSVAKVVRVASGSAVVLPLARIATVVIGGVVAVPMVL---SAMGFTAAG
                                     : .:.:: ::::::  ::   ::::::..:
CCDS99                    MGKESGWDSGRAAVAAVV-GGVVAVGTVLVALSAMGFTSVG
                                  10         20        30        40

        60        70        80        90       100       110       
pF1KB8 IASSSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAIAAVIAR
       ::.:::::::::.::::::::::.::::: :::.::.:::  .: : :  :.:..:    
CCDS99 IAASSIAAKMMSTAAIANGGGVAAGSLVAILQSVGAAGLSVTSKVIGGFAGTALGAWLGS
               50        60        70        80        90       100

           
pF1KB8 FY  
           
CCDS99 PPSS
           




119 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:06:11 2016 done: Fri Nov  4 12:06:11 2016
 Total Scan time:  1.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]