FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8356, 381 aa
  1>>>pF1KB8356 381 - 381 aa - 381 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8181+/-0.000336; mu= 7.1644+/- 0.021
 mean_var=161.5413+/-32.335, 0's: 0 Z-trim(120.6): 2  B-trim: 1273 in 1/56
 Lambda= 0.100910
 statistics sampled from 35961 (35963) to 35961 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.422), width:  16
 Scan time:  7.890

The best scores are:                                      opt bits E(85289)
NP_631905 (OMIM: 609747) actin-binding Rho-activat ( 381) 2611 391.5 1.7e-108


>>NP_631905 (OMIM: 609747) actin-binding Rho-activating   (381 aa)
 initn: 2611 init1: 2611 opt: 2611  Z-score: 2068.8  bits: 391.5 E(85289): 1.7e-108
Smith-Waterman score: 2611; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:1-381)

               10        20        30        40        50        60
pF1KB8 MAPGEKESGEGPAKSALRKIRTATLVISLARGWQQWANENSIRQAQEPTGWLPGGTQDSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 MAPGEKESGEGPAKSALRKIRTATLVISLARGWQQWANENSIRQAQEPTGWLPGGTQDSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSEKAPEVSHIKKKEVSKTVVSKTYER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 QAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSEKAPEVSHIKKKEVSKTVVSKTYER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GGDVSHLSHRYERDAGVLEPGQPENDIDRILHSHGSPTRRRKCANLVSELTKGWRVMEQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 GGDVSHLSHRYERDAGVLEPGQPENDIDRILHSHGSPTRRRKCANLVSELTKGWRVMEQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 EPTWRSDSVDTEDSGYGGEAEERPEQDGVQVAVVRIKRPLPSQVNRFTEKLNCKAQQKYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 EPTWRSDSVDTEDSGYGGEAEERPEQDGVQVAVVRIKRPLPSQVNRFTEKLNCKAQQKYS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 PVGNLKGRWQQWADEHIQSQKLNPFSEEFDYELAMSTRLHKGDEGYGRPKEGTKTAERAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 PVGNLKGRWQQWADEHIQSQKLNPFSEEFDYELAMSTRLHKGDEGYGRPKEGTKTAERAK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 RAEEHIYREMMDMCFIICTMARHRRDGKIQVTFGDLFDRYVRISDKVVGILMRARKHGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 RAEEHIYREMMDMCFIICTMARHRRDGKIQVTFGDLFDRYVRISDKVVGILMRARKHGLV
              310       320       330       340       350       360

              370       380 
pF1KB8 DFEGEMLWQGRDDHVVITLLK
       :::::::::::::::::::::
NP_631 DFEGEMLWQGRDDHVVITLLK
              370       380 




381 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:03:33 2016 done: Fri Nov  4 12:03:34 2016
 Total Scan time:  7.890 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]