FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8356, 381 aa
  1>>>pF1KB8356 381 - 381 aa - 381 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1462+/-0.000872; mu= 5.1624+/- 0.053
 mean_var=154.5132+/-30.080, 0's: 0 Z-trim(112.7): 3  B-trim: 0 in 0/52
 Lambda= 0.103179
 statistics sampled from 13390 (13393) to 13390 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.411), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS6305.1 ABRA gene_id:137735|Hs108|chr8          ( 381) 2611 399.9 1.9e-111


>>CCDS6305.1 ABRA gene_id:137735|Hs108|chr8               (381 aa)
 initn: 2611 init1: 2611 opt: 2611  Z-score: 2114.3  bits: 399.9 E(32554): 1.9e-111
Smith-Waterman score: 2611; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:1-381)

               10        20        30        40        50        60
pF1KB8 MAPGEKESGEGPAKSALRKIRTATLVISLARGWQQWANENSIRQAQEPTGWLPGGTQDSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MAPGEKESGEGPAKSALRKIRTATLVISLARGWQQWANENSIRQAQEPTGWLPGGTQDSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSEKAPEVSHIKKKEVSKTVVSKTYER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 QAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSEKAPEVSHIKKKEVSKTVVSKTYER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GGDVSHLSHRYERDAGVLEPGQPENDIDRILHSHGSPTRRRKCANLVSELTKGWRVMEQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 GGDVSHLSHRYERDAGVLEPGQPENDIDRILHSHGSPTRRRKCANLVSELTKGWRVMEQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 EPTWRSDSVDTEDSGYGGEAEERPEQDGVQVAVVRIKRPLPSQVNRFTEKLNCKAQQKYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EPTWRSDSVDTEDSGYGGEAEERPEQDGVQVAVVRIKRPLPSQVNRFTEKLNCKAQQKYS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 PVGNLKGRWQQWADEHIQSQKLNPFSEEFDYELAMSTRLHKGDEGYGRPKEGTKTAERAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PVGNLKGRWQQWADEHIQSQKLNPFSEEFDYELAMSTRLHKGDEGYGRPKEGTKTAERAK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 RAEEHIYREMMDMCFIICTMARHRRDGKIQVTFGDLFDRYVRISDKVVGILMRARKHGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 RAEEHIYREMMDMCFIICTMARHRRDGKIQVTFGDLFDRYVRISDKVVGILMRARKHGLV
              310       320       330       340       350       360

              370       380 
pF1KB8 DFEGEMLWQGRDDHVVITLLK
       :::::::::::::::::::::
CCDS63 DFEGEMLWQGRDDHVVITLLK
              370       380 




381 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:03:33 2016 done: Fri Nov  4 12:03:33 2016
 Total Scan time:  2.190 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]