Result of FASTA (omim) for
pF1KB8353
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8353, 347 aa
1>>>pF1KB8353 347 - 347 aa - 347 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0991+/-0.000353; mu= 17.1595+/- 0.022
mean_var=64.2169+/-12.745, 0's: 0 Z-trim(114.2): 60 B-trim: 213 in 1/55
Lambda= 0.160048
statistics sampled from 23881 (23943) to 23881 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.281), width: 16
Scan time: 6.090
The best scores are: opt bits E(85289)
NP_079103 (OMIM: 607226) histone deacetylase 11 is ( 347) 2316 543.5 2.6e-154
XP_011532433 (OMIM: 607226) PREDICTED: histone dea ( 319) 2116 497.3 1.9e-140
XP_005265548 (OMIM: 607226) PREDICTED: histone dea ( 319) 2116 497.3 1.9e-140
NP_001129513 (OMIM: 607226) histone deacetylase 11 ( 296) 1605 379.2 6e-105
XP_011532437 (OMIM: 607226) PREDICTED: histone dea ( 225) 1507 356.5 3.1e-98
XP_011532434 (OMIM: 607226) PREDICTED: histone dea ( 240) 1224 291.2 1.5e-78
NP_001317565 (OMIM: 607226) histone deacetylase 11 ( 268) 1224 291.2 1.7e-78
XP_006713401 (OMIM: 607226) PREDICTED: histone dea ( 268) 908 218.3 1.5e-56
XP_016862723 (OMIM: 607226) PREDICTED: histone dea ( 240) 845 203.7 3.4e-52
NP_001518 (OMIM: 605164) histone deacetylase 2 [Ho ( 488) 305 79.2 2.1e-14
XP_011534090 (OMIM: 605164) PREDICTED: histone dea ( 458) 298 77.6 6e-14
XP_016866288 (OMIM: 605164) PREDICTED: histone dea ( 458) 298 77.6 6e-14
NP_004955 (OMIM: 601241) histone deacetylase 1 [Ho ( 482) 292 76.2 1.6e-13
NP_060956 (OMIM: 300269) histone deacetylase 8 iso ( 377) 278 72.9 1.3e-12
XP_011529289 (OMIM: 300269) PREDICTED: histone dea ( 379) 278 72.9 1.3e-12
XP_011529288 (OMIM: 300269) PREDICTED: histone dea ( 441) 278 72.9 1.4e-12
XP_016885135 (OMIM: 300269) PREDICTED: histone dea ( 274) 247 65.7 1.4e-10
NP_003874 (OMIM: 605166) histone deacetylase 3 [Ho ( 428) 241 64.4 5.2e-10
NP_001159891 (OMIM: 300269) histone deacetylase 8 ( 256) 192 52.9 8.7e-07
NP_001152758 (OMIM: 608544) histone deacetylase 10 ( 649) 194 53.7 1.4e-06
NP_114408 (OMIM: 608544) histone deacetylase 10 is ( 669) 194 53.7 1.4e-06
XP_016885136 (OMIM: 300269) PREDICTED: histone dea ( 268) 175 49.0 1.4e-05
XP_016885130 (OMIM: 300269) PREDICTED: histone dea ( 389) 175 49.1 1.9e-05
XP_016885129 (OMIM: 300269) PREDICTED: histone dea ( 415) 175 49.1 2e-05
NP_001159890 (OMIM: 300269) histone deacetylase 8 ( 286) 157 44.9 0.00026
XP_016885131 (OMIM: 300269) PREDICTED: histone dea ( 350) 157 44.9 0.00031
NP_478056 (OMIM: 606543) histone deacetylase 9 iso (1011) 162 46.4 0.00033
NP_001308826 (OMIM: 606543) histone deacetylase 9 (1025) 162 46.4 0.00033
XP_016868317 (OMIM: 606543) PREDICTED: histone dea (1025) 162 46.4 0.00033
NP_001308806 (OMIM: 606543) histone deacetylase 9 (1025) 162 46.4 0.00033
XP_011513948 (OMIM: 606543) PREDICTED: histone dea (1035) 162 46.4 0.00033
XP_011513946 (OMIM: 606543) PREDICTED: histone dea (1038) 162 46.4 0.00033
XP_011513947 (OMIM: 606543) PREDICTED: histone dea (1038) 162 46.4 0.00033
XP_016868316 (OMIM: 606543) PREDICTED: histone dea (1043) 162 46.4 0.00033
XP_011513943 (OMIM: 606543) PREDICTED: histone dea (1043) 162 46.4 0.00033
XP_011513944 (OMIM: 606543) PREDICTED: histone dea (1043) 162 46.4 0.00033
XP_011513936 (OMIM: 606543) PREDICTED: histone dea (1044) 162 46.4 0.00033
NP_001308797 (OMIM: 606543) histone deacetylase 9 (1044) 162 46.4 0.00033
NP_848510 (OMIM: 606543) histone deacetylase 9 iso (1066) 162 46.4 0.00034
XP_016868315 (OMIM: 606543) PREDICTED: histone dea (1066) 162 46.4 0.00034
XP_011513940 (OMIM: 606543) PREDICTED: histone dea (1069) 162 46.4 0.00034
XP_011513941 (OMIM: 606543) PREDICTED: histone dea (1069) 162 46.4 0.00034
NP_848512 (OMIM: 606543) histone deacetylase 9 iso (1069) 162 46.4 0.00034
XP_011513939 (OMIM: 606543) PREDICTED: histone dea (1071) 162 46.4 0.00034
XP_011513938 (OMIM: 606543) PREDICTED: histone dea (1071) 162 46.4 0.00034
XP_011513937 (OMIM: 606543) PREDICTED: histone dea (1074) 162 46.4 0.00034
XP_011513950 (OMIM: 606543) PREDICTED: histone dea (1074) 162 46.4 0.00034
XP_011513951 (OMIM: 606543) PREDICTED: histone dea (1074) 162 46.4 0.00034
XP_011513931 (OMIM: 606543) PREDICTED: histone dea (1088) 162 46.4 0.00035
XP_011513933 (OMIM: 606543) PREDICTED: histone dea (1096) 162 46.4 0.00035
>>NP_079103 (OMIM: 607226) histone deacetylase 11 isofor (347 aa)
initn: 2316 init1: 2316 opt: 2316 Z-score: 2891.4 bits: 543.5 E(85289): 2.6e-154
Smith-Waterman score: 2316; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KB8 MLHTTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MLHTTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSML
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 VEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 TIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 DAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 DAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVER
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 NIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 NIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVT
250 260 270 280 290 300
310 320 330 340
pF1KB8 SGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP
:::::::::::::::::::::::::::::::::::::::::::::::
NP_079 SGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP
310 320 330 340
>>XP_011532433 (OMIM: 607226) PREDICTED: histone deacety (319 aa)
initn: 2116 init1: 2116 opt: 2116 Z-score: 2642.3 bits: 497.3 E(85289): 1.9e-140
Smith-Waterman score: 2116; 100.0% identity (100.0% similar) in 319 aa overlap (29-347:1-319)
10 20 30 40 50 60
pF1KB8 MLHTTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSML
::::::::::::::::::::::::::::::::
XP_011 MGLEKLHPFDAGKWGKVINFLKEEKLLSDSML
10 20 30
70 80 90 100 110 120
pF1KB8 VEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 TIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 DAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVER
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 NIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVT
220 230 240 250 260 270
310 320 330 340
pF1KB8 SGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP
280 290 300 310
>>XP_005265548 (OMIM: 607226) PREDICTED: histone deacety (319 aa)
initn: 2116 init1: 2116 opt: 2116 Z-score: 2642.3 bits: 497.3 E(85289): 1.9e-140
Smith-Waterman score: 2116; 100.0% identity (100.0% similar) in 319 aa overlap (29-347:1-319)
10 20 30 40 50 60
pF1KB8 MLHTTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSML
::::::::::::::::::::::::::::::::
XP_005 MGLEKLHPFDAGKWGKVINFLKEEKLLSDSML
10 20 30
70 80 90 100 110 120
pF1KB8 VEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 TIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 DAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVER
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 NIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVT
220 230 240 250 260 270
310 320 330 340
pF1KB8 SGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP
:::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP
280 290 300 310
>>NP_001129513 (OMIM: 607226) histone deacetylase 11 iso (296 aa)
initn: 1605 init1: 1605 opt: 1605 Z-score: 2005.1 bits: 379.2 E(85289): 6e-105
Smith-Waterman score: 1906; 92.8% identity (92.8% similar) in 319 aa overlap (29-347:1-296)
10 20 30 40 50 60
pF1KB8 MLHTTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSML
::::::::::::::::::::::::::::::::
NP_001 MGLEKLHPFDAGKWGKVINFLKEEKLLSDSML
10 20 30
70 80 90 100 110 120
pF1KB8 VEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG
:::::::::::::::::::::::: :::::::::::::
NP_001 VEAREASEEDLLVVHTRRYLNELK-----------------------RKVLRPLRTQTGG
40 50 60
130 140 150 160 170 180
pF1KB8 TIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDL
70 80 90 100 110 120
190 200 210 220 230 240
pF1KB8 DAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVER
130 140 150 160 170 180
250 260 270 280 290 300
pF1KB8 NIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVT
190 200 210 220 230 240
310 320 330 340
pF1KB8 SGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP
250 260 270 280 290
>>XP_011532437 (OMIM: 607226) PREDICTED: histone deacety (225 aa)
initn: 1507 init1: 1507 opt: 1507 Z-score: 1884.6 bits: 356.5 E(85289): 3.1e-98
Smith-Waterman score: 1507; 100.0% identity (100.0% similar) in 225 aa overlap (123-347:1-225)
100 110 120 130 140 150
pF1KB8 TEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGF
::::::::::::::::::::::::::::::
XP_011 MAGKLAVERGWAINVGGGFHHCSSDRGGGF
10 20 30
160 170 180 190 200 210
pF1KB8 CAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGD
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB8 RFAKQAIRRKVELEWGTEDDEYLDKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RFAKQAIRRKVELEWGTEDDEYLDKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLS
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB8 ISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFGLGLIGPESPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFGLGLIGPESPSV
160 170 180 190 200 210
340
pF1KB8 SAQNSDTPLLPPAVP
:::::::::::::::
XP_011 SAQNSDTPLLPPAVP
220
>>XP_011532434 (OMIM: 607226) PREDICTED: histone deacety (240 aa)
initn: 1224 init1: 1224 opt: 1224 Z-score: 1531.0 bits: 291.2 E(85289): 1.5e-78
Smith-Waterman score: 1408; 75.2% identity (75.2% similar) in 319 aa overlap (29-347:1-240)
10 20 30 40 50 60
pF1KB8 MLHTTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSML
::::::::::::::::::::::::::::::::
XP_011 MGLEKLHPFDAGKWGKVINFLKEEKLLSDSML
10 20 30
70 80 90 100 110 120
pF1KB8 VEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG
::::::::::::::::::::::::
XP_011 VEAREASEEDLLVVHTRRYLNELK------------------------------------
40 50
130 140 150 160 170 180
pF1KB8 TIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDL
:::::::::::::::::
XP_011 -------------------------------------------FLFERVEGISRATIIDL
60 70
190 200 210 220 230 240
pF1KB8 DAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVER
80 90 100 110 120 130
250 260 270 280 290 300
pF1KB8 NIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVT
140 150 160 170 180 190
310 320 330 340
pF1KB8 SGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP
200 210 220 230 240
>>NP_001317565 (OMIM: 607226) histone deacetylase 11 iso (268 aa)
initn: 1224 init1: 1224 opt: 1224 Z-score: 1530.3 bits: 291.2 E(85289): 1.7e-78
Smith-Waterman score: 1608; 77.2% identity (77.2% similar) in 347 aa overlap (1-347:1-268)
10 20 30 40 50 60
pF1KB8 MLHTTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLHTTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSML
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG
::::::::::::::::::::::::
NP_001 VEAREASEEDLLVVHTRRYLNELK------------------------------------
70 80
130 140 150 160 170 180
pF1KB8 TIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDL
:::::::::::::::::
NP_001 -------------------------------------------FLFERVEGISRATIIDL
90 100
190 200 210 220 230 240
pF1KB8 DAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVER
110 120 130 140 150 160
250 260 270 280 290 300
pF1KB8 NIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVT
170 180 190 200 210 220
310 320 330 340
pF1KB8 SGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP
230 240 250 260
>>XP_006713401 (OMIM: 607226) PREDICTED: histone deacety (268 aa)
initn: 1739 init1: 908 opt: 908 Z-score: 1136.0 bits: 218.3 E(85289): 1.5e-56
Smith-Waterman score: 1585; 76.9% identity (77.2% similar) in 347 aa overlap (1-347:1-268)
10 20 30 40 50 60
pF1KB8 MLHTTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MLHTTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSML
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDL
:::::::::::::::::
XP_006 TIMAGKLAVERGWAINV-------------------------------------------
130
190 200 210 220 230 240
pF1KB8 DAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVER
.:::::::::::::::::::::::
XP_006 ------------------------------------EAIRRKVELEWGTEDDEYLDKVER
140 150 160
250 260 270 280 290 300
pF1KB8 NIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVT
170 180 190 200 210 220
310 320 330 340
pF1KB8 SGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP
:::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP
230 240 250 260
>>XP_016862723 (OMIM: 607226) PREDICTED: histone deacety (240 aa)
initn: 1539 init1: 845 opt: 845 Z-score: 1058.1 bits: 203.7 E(85289): 3.4e-52
Smith-Waterman score: 1385; 74.9% identity (75.2% similar) in 319 aa overlap (29-347:1-240)
10 20 30 40 50 60
pF1KB8 MLHTTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSML
::::::::::::::::::::::::::::::::
XP_016 MGLEKLHPFDAGKWGKVINFLKEEKLLSDSML
10 20 30
70 80 90 100 110 120
pF1KB8 VEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 TIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDL
:::::::::::::::::
XP_016 TIMAGKLAVERGWAINV-------------------------------------------
100
190 200 210 220 230 240
pF1KB8 DAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVER
.:::::::::::::::::::::::
XP_016 ------------------------------------EAIRRKVELEWGTEDDEYLDKVER
110 120 130
250 260 270 280 290 300
pF1KB8 NIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVT
140 150 160 170 180 190
310 320 330 340
pF1KB8 SGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP
200 210 220 230 240
>>NP_001518 (OMIM: 605164) histone deacetylase 2 [Homo s (488 aa)
initn: 200 init1: 103 opt: 305 Z-score: 379.7 bits: 79.2 E(85289): 2.1e-14
Smith-Waterman score: 305; 27.4% identity (56.9% similar) in 288 aa overlap (35-307:29-307)
10 20 30 40 50 60
pF1KB8 TQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEAR
::. . . :.: . : . . .
NP_001 MAYSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPH
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPL----RTQTGG
.:. :.. :. .:.. :. :. ...: . : . :. : . .:::
NP_001 KATAEEMTKYHSDEYIKFLR-SIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGG
60 70 80 90 100 110
130 140 150 160 170
pF1KB8 TIMAGKLAVER---GWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATI
.. :: . ..: :.: .::.:: ......::: ::.::: .: .. .:.
NP_001 SV-AGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAI---LELLKYHQRVLY
120 130 140 150 160 170
180 190 200 210 220
pF1KB8 IDLDAHQGNGHERDFMDDKRVYIMDVYNR-HIYPG-----DRFAKQAIRRKVELEW--GT
::.: :.:.: :. :. ::. .. .. . .:: : : .. :.. :
NP_001 IDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGI
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 EDDEYLDKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMV
.:. : . . :.: .. . :..:: . :.: : ::::: .... : .: :.:
NP_001 DDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVV----
240 250 260 270 280
290 300 310 320 330 340
pF1KB8 RGRRVPILMVTSGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP
. .:.::. .::: :
NP_001 KTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPS
290 300 310 320 330 340
347 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:00:55 2016 done: Fri Nov 4 12:00:55 2016
Total Scan time: 6.090 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]