FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8347, 378 aa
  1>>>pF1KB8347 378 - 378 aa - 378 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9152+/-0.000966; mu= 6.1412+/- 0.058
 mean_var=184.4643+/-37.269, 0's: 0 Z-trim(111.6): 17  B-trim: 81 in 1/52
 Lambda= 0.094432
 statistics sampled from 12496 (12505) to 12496 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.384), width:  16
 Scan time:  2.960

The best scores are:                                      opt bits E(32554)
CCDS12237.1 CDC37 gene_id:11140|Hs108|chr19        ( 378) 2533 357.2 1.4e-98
CCDS6454.1 CDC37L1 gene_id:55664|Hs108|chr9        ( 337)  747 113.8 2.2e-25


>>CCDS12237.1 CDC37 gene_id:11140|Hs108|chr19             (378 aa)
 initn: 2533 init1: 2533 opt: 2533  Z-score: 1883.4  bits: 357.2 E(32554): 1.4e-98
Smith-Waterman score: 2533; 99.5% identity (99.5% similar) in 378 aa overlap (1-378:1-378)

               10        20        30        40        50        60
pF1KB8 MVDYSVWDHIEVSDDEDETHPNIDTASLFRWRHQARVERMEQFQKEKEELDRGCRECKRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MVDYSVWDHIEVSDDEDETHPNIDTASLFRWRHQARVERMEQFQKEKEELDRGCRECKRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VAECQRKLKELEVAEGGKAELERQQAEAQQLRKEERSWEQKLEEMRKKEKSMPWNVDTLS
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
CCDS12 VAECQRKLKELEVAEGGKAELERLQAEAQQLRKEERSWEQKLEEMRKKEKSMPWNVDTLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 KDGFSKSMVNTKPEKTEEDSEEVREQKHKTFVEKYEKQIKHFGMLRRWDDSQKYLSDNVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KDGFSKSMVNTKPEKTEEDSEEVREQKHKTFVEKYEKQIKHFGMLRRWDDSQKYLSDNVH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LVCEETANYLVIWCIDLEVEEKCALMEQVAHQTIVMQFILELAKSLKVDPRACFRQFFTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LVCEETANYLVIWCIDLEVEEKCALMEQVAHQTIVMQFILELAKSLKVDPRACFRQFFTK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 IKTADRQYMEGFNDELEAFKERVRGRAKLRIEKAMKEYEEEERKKRLGPGGLDPVEVYES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IKTADRQYMEGFNDELEAFKERVRGRAKLRIEKAMKEYEEEERKKRLGPGGLDPVEVYES
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 LPEELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDPGLWVPNSKASEAKEGEEAGPG
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS12 LPEELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKASEAKEGEEAGPG
              310       320       330       340       350       360

              370        
pF1KB8 DPLLEAVPKTGDEKDVSV
       ::::::::::::::::::
CCDS12 DPLLEAVPKTGDEKDVSV
              370        

>>CCDS6454.1 CDC37L1 gene_id:55664|Hs108|chr9             (337 aa)
 initn: 608 init1: 554 opt: 747  Z-score: 569.0  bits: 113.8 E(32554): 2.2e-25
Smith-Waterman score: 747; 44.3% identity (73.7% similar) in 262 aa overlap (44-303:55-304)

            20        30        40        50        60        70   
pF1KB8 DDEDETHPNIDTASLFRWRHQARVERMEQFQKEKEELDRGCRECKRKVAECQRKLKELEV
                                     ::.:: . ..   :: ..:: :.::  : .
CCDS64 DFDVFPSSPRCPQLPGGGAQMYSHGIELACQKQKEFV-KSSVACKWNLAEAQQKLGSLAL
           30        40        50        60         70        80   

              80        90       100       110       120       130 
pF1KB8 --AEGGKAELERQQAEAQQLRKEERSWEQKLEEMRKKEKSMPWNVDTLSKDGFSKSMVNT
         .:.   :  . :. ...::..:. :.:: : . ..::   :..:..::: :.::..: 
CCDS64 HNSESLDQEHAKAQTAVSELRQREEEWRQKEEALVQREKMCLWSTDAISKDVFNKSFINQ
            90       100       110       120       130       140   

             140       150       160       170       180       190 
pF1KB8 KPEKTEEDSEEVREQKHKTFVEKYEKQIKHFGMLRRWDDSQKYLSDNVHLVCEETANYLV
         .:  ::     :.: ..:..:::..:.::::: ::::::..:::. .:::::::.::.
CCDS64 DKRKDTED-----EDKSESFMQKYEQKIRHFGMLSRWDDSQRFLSDHPYLVCEETAKYLI
           150            160       170       180       190        

             200       210       220       230       240       250 
pF1KB8 IWCIDLEVEEKCALMEQVAHQTIVMQFILELAKSLKVDPRACFRQFFTKIKTADRQYMEG
       .::. ::.:.: :::::.:::..:::::.:.::. .::::.::: :: : :. .. :.:.
CCDS64 LWCFHLEAEKKGALMEQIAHQAVVMQFIMEMAKNCNVDPRGCFRLFFQKAKAEEEGYFEA
      200       210       220       230       240       250        

             260       270       280       290       300       310 
pF1KB8 FNDELEAFKERVRGRAKLRIEKAMKEYEEEERKKRLGPGGLDPVEVYESLPEELQKCFDV
       :..:::::: :::      . .  . ..    ....  .:.  . . ::::.        
CCDS64 FKNELEAFKSRVR------LYSQSQSFQPMTVQNHVPHSGVGSIGLLESLPQNPDYLQYS
      260       270             280       290       300       310  

             320       330       340       350       360       370 
pF1KB8 KDVQMLQDAISKMDPTDAKYHMQRCIDPGLWVPNSKASEAKEGEEAGPGDPLLEAVPKTG
                                                                   
CCDS64 ISTALCSLNSVVHKEDDEPKMMDTV                                   
            320       330                                          




378 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:59:31 2016 done: Fri Nov  4 11:59:32 2016
 Total Scan time:  2.960 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]