FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8344, 301 aa
  1>>>pF1KB8344 301 - 301 aa - 301 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2684+/-0.000896; mu= 7.1726+/- 0.054
 mean_var=131.0722+/-25.818, 0's: 0 Z-trim(110.5): 20  B-trim: 13 in 1/50
 Lambda= 0.112026
 statistics sampled from 11631 (11646) to 11631 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.358), width:  16
 Scan time:  2.390

The best scores are:                                      opt bits E(32554)
CCDS6845.1 PDCL gene_id:5082|Hs108|chr9            ( 301) 1980 330.9 7.1e-91
CCDS41447.1 PDC gene_id:5132|Hs108|chr1            ( 194)  641 114.4 6.9e-26
CCDS1370.1 PDC gene_id:5132|Hs108|chr1             ( 246)  641 114.5 8.4e-26


>>CCDS6845.1 PDCL gene_id:5082|Hs108|chr9                 (301 aa)
 initn: 1980 init1: 1980 opt: 1980  Z-score: 1745.0  bits: 330.9 E(32554): 7.1e-91
Smith-Waterman score: 1980; 99.7% identity (100.0% similar) in 301 aa overlap (1-301:1-301)

               10        20        30        40        50        60
pF1KB8 MTTLDDKLLGEKLQYYYSSSEDEDSDHEDKDRGRCAPASSSVPAEAELAGEGISVNTGPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MTTLDDKLLGEKLQYYYSSSEDEDSDHEDKDRGRCAPASSSVPAEAELAGEGISVNTGPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GVINDWRRFKQLETEQREEQCREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 GVINDWRRFKQLETEQREEQCREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LKEFAIMNEDQDDEEFLQQYRKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 LKEFAIMNEDQDDEEFLQQYRKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 IVIMVHIYEDGIPGTEAMNGCMICLAAEYPAVKFCKVESSVIGASSQFTRNALPALLIYK
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS68 IVIMVHIYEDGIPGTEAMNGCMICLAAEYPAVKFCKVKSSVIGASSQFTRNALPALLIYK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GGELIGNFVRVTDQLGDDFFAVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 GGELIGNFVRVTDQLGDDFFAVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEI
              250       260       270       280       290       300

        
pF1KB8 D
       :
CCDS68 D
        

>>CCDS41447.1 PDC gene_id:5132|Hs108|chr1                 (194 aa)
 initn: 660 init1: 640 opt: 641  Z-score: 578.2  bits: 114.4 E(32554): 6.9e-26
Smith-Waterman score: 641; 48.6% identity (84.2% similar) in 183 aa overlap (104-286:5-187)

            80        90       100       110       120       130   
pF1KB8 TEQREEQCREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMTLKEFAIMNEDQDD
                                     .... :: .:..: ::...:. .......:
CCDS41                           MSSPQSRNGKDSKERVSRKMSIQEYELIHKEKED
                                         10        20        30    

           140       150       160       170       180       190   
pF1KB8 EEFLQQYRKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKSIVIMVHIYEDGIP
       :. :..::.: :..:.:.:  ::..  :.:. .:. ::. :.:: :  .:.:::::::: 
CCDS41 ENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYEDGIK
           40        50        60        70        80        90    

           200       210       220       230       240       250   
pF1KB8 GTEAMNGCMICLAAEYPAVKFCKVESSVIGASSQFTRNALPALLIYKGGELIGNFVRVTD
       : .:.:. . ::::::: :::::...:  ::...:. ..::.::::::::::.::. :..
CCDS41 GCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFISVAE
          100       110       120       130       140       150    

           260       270       280       290       300 
pF1KB8 QLGDDFFAVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEID
       :....::: :.:.::.:.:::::.:: ::  ..               
CCDS41 QFAEEFFAGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE        
          160       170       180       190            

>>CCDS1370.1 PDC gene_id:5132|Hs108|chr1                  (246 aa)
 initn: 753 init1: 640 opt: 641  Z-score: 576.7  bits: 114.5 E(32554): 8.4e-26
Smith-Waterman score: 733; 45.3% identity (79.2% similar) in 236 aa overlap (51-286:14-239)

               30        40        50        60        70        80
pF1KB8 EDEDSDHEDKDRGRCAPASSSVPAEAELAGEGISVNTGPKGVINDWRRFKQLETEQREEQ
                                     :: ...:::::::::::.:: ::... .  
CCDS13                  MEEAKSQSLEEDFEGQATHTGPKGVINDWRKFK-LESQDSDSI
                                10        20        30         40  

               90       100       110       120       130       140
pF1KB8 CREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMTLKEFAIMNEDQDDEEFLQQY
           .......:           .... :: .:..: ::...:. .......::. :..:
CCDS13 PPSKKEILRQMS---------SPQSRNGKDSKERVSRKMSIQEYELIHKEKEDENCLRKY
             50                 60        70        80        90   

              150       160       170       180       190       200
pF1KB8 RKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKSIVIMVHIYEDGIPGTEAMNG
       :.: :..:.:.:  ::..  :.:. .:. ::. :.:: :  .:.:::::::: : .:.:.
CCDS13 RRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNS
           100       110       120       130       140       150   

              210       220       230       240       250       260
pF1KB8 CMICLAAEYPAVKFCKVESSVIGASSQFTRNALPALLIYKGGELIGNFVRVTDQLGDDFF
        . ::::::: :::::...:  ::...:. ..::.::::::::::.::. :..:....::
CCDS13 SLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFISVAEQFAEEFF
           160       170       180       190       200       210   

              270       280       290       300 
pF1KB8 AVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEID
       : :.:.::.:.:::::.:: ::  ..               
CCDS13 AGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE        
           220       230       240              




301 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:56:51 2016 done: Fri Nov  4 11:56:52 2016
 Total Scan time:  2.390 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]