Result of FASTA (omim) for
pF1KB8342
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8342, 348 aa
1>>>pF1KB8342 348 - 348 aa - 348 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2836+/-0.000512; mu= 16.1886+/- 0.032
mean_var=119.9424+/-31.267, 0's: 0 Z-trim(109.4): 632 B-trim: 1835 in 2/50
Lambda= 0.117108
statistics sampled from 16769 (17571) to 16769 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.553), E-opt: 0.2 (0.206), width: 16
Scan time: 6.640
The best scores are: opt bits E(85289)
NP_000530 (OMIM: 136880,180380,610445,613731) rhod ( 348) 2347 408.6 1.1e-113
NP_001699 (OMIM: 190900,613522) short-wave-sensiti ( 348) 1085 195.4 1.6e-49
NP_000504 (OMIM: 300821,303700,303800) medium-wave ( 364) 1002 181.4 2.8e-45
NP_064445 (OMIM: 300822,303700,303900) long-wave-s ( 364) 994 180.0 7e-45
NP_055137 (OMIM: 606695) opsin-3 [Homo sapiens] ( 402) 596 112.8 1.3e-24
NP_006574 (OMIM: 605224) visual pigment-like recep ( 337) 547 104.4 3.6e-22
NP_859528 (OMIM: 609042) opsin-5 [Homo sapiens] ( 354) 449 87.9 3.6e-17
XP_016865905 (OMIM: 609042) PREDICTED: opsin-5 iso ( 408) 449 88.0 4e-17
NP_001166031 (OMIM: 182455) somatostatin receptor ( 364) 431 84.9 3e-16
NP_001044 (OMIM: 182455) somatostatin receptor typ ( 364) 431 84.9 3e-16
XP_016865900 (OMIM: 609042) PREDICTED: opsin-5 iso ( 298) 419 82.7 1.1e-15
NP_001048 (OMIM: 162321) substance-K receptor [Hom ( 398) 418 82.7 1.5e-15
NP_150598 (OMIM: 606665) melanopsin isoform 1 [Hom ( 478) 411 81.7 3.7e-15
XP_016872445 (OMIM: 606665) PREDICTED: melanopsin ( 528) 411 81.7 4e-15
XP_016872446 (OMIM: 606665) PREDICTED: melanopsin ( 405) 399 79.5 1.4e-14
NP_001025186 (OMIM: 606665) melanopsin isoform 2 [ ( 489) 399 79.6 1.5e-14
XP_016872444 (OMIM: 606665) PREDICTED: melanopsin ( 539) 399 79.7 1.6e-14
NP_001041 (OMIM: 182452) somatostatin receptor typ ( 369) 393 78.5 2.6e-14
NP_001049 (OMIM: 162323) substance-P receptor isof ( 407) 387 77.5 5.6e-14
NP_001050 (OMIM: 162332,614840) neuromedin-K recep ( 465) 383 76.9 9.7e-14
NP_005949 (OMIM: 600665) melatonin receptor type 1 ( 350) 378 75.9 1.5e-13
NP_001138757 (OMIM: 600018) mu-type opioid recepto ( 389) 378 76.0 1.6e-13
NP_001008504 (OMIM: 600018) mu-type opioid recepto ( 392) 378 76.0 1.6e-13
NP_001138755 (OMIM: 600018) mu-type opioid recepto ( 397) 378 76.0 1.6e-13
NP_000905 (OMIM: 600018) mu-type opioid receptor i ( 400) 378 76.0 1.6e-13
NP_001138756 (OMIM: 600018) mu-type opioid recepto ( 403) 378 76.0 1.6e-13
NP_001138754 (OMIM: 600018) mu-type opioid recepto ( 406) 378 76.0 1.6e-13
NP_001272452 (OMIM: 600018) mu-type opioid recepto ( 414) 378 76.0 1.6e-13
NP_001008503 (OMIM: 600018) mu-type opioid recepto ( 418) 378 76.0 1.6e-13
NP_001138758 (OMIM: 600018) mu-type opioid recepto ( 420) 378 76.0 1.6e-13
NP_001008505 (OMIM: 600018) mu-type opioid recepto ( 446) 378 76.0 1.7e-13
NP_001272453 (OMIM: 600018) mu-type opioid recepto ( 493) 378 76.1 1.8e-13
NP_001138751 (OMIM: 600018) mu-type opioid recepto ( 493) 378 76.1 1.8e-13
NP_004215 (OMIM: 300207) melatonin-related recepto ( 617) 378 76.2 2.1e-13
NP_056542 (OMIM: 162323) substance-P receptor isof ( 311) 363 73.3 7.9e-13
NP_001040 (OMIM: 182451) somatostatin receptor typ ( 391) 350 71.2 4.2e-12
XP_005263088 (OMIM: 162641) PREDICTED: neuropeptid ( 384) 348 70.9 5.2e-12
XP_011530312 (OMIM: 162641) PREDICTED: neuropeptid ( 384) 348 70.9 5.2e-12
NP_000900 (OMIM: 162641) neuropeptide Y receptor t ( 384) 348 70.9 5.2e-12
NP_000904 (OMIM: 602548) nociceptin receptor isofo ( 370) 342 69.9 1e-11
XP_016883343 (OMIM: 602548) PREDICTED: nociceptin ( 370) 342 69.9 1e-11
NP_001186948 (OMIM: 602548) nociceptin receptor is ( 370) 342 69.9 1e-11
NP_872588 (OMIM: 602548) nociceptin receptor isofo ( 370) 342 69.9 1e-11
NP_000903 (OMIM: 165196) kappa-type opioid recepto ( 380) 342 69.9 1e-11
XP_016883342 (OMIM: 602548) PREDICTED: nociceptin ( 388) 342 69.9 1.1e-11
XP_016883341 (OMIM: 602548) PREDICTED: nociceptin ( 388) 342 69.9 1.1e-11
XP_011527130 (OMIM: 602548) PREDICTED: nociceptin ( 388) 342 69.9 1.1e-11
NP_001305782 (OMIM: 602548) nociceptin receptor is ( 399) 342 69.9 1.1e-11
NP_001305426 (OMIM: 165196) kappa-type opioid rece ( 409) 342 69.9 1.1e-11
NP_001043 (OMIM: 182454) somatostatin receptor typ ( 388) 341 69.7 1.2e-11
>>NP_000530 (OMIM: 136880,180380,610445,613731) rhodopsi (348 aa)
initn: 2347 init1: 2347 opt: 2347 Z-score: 2162.3 bits: 408.6 E(85289): 1.1e-113
Smith-Waterman score: 2347; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)
10 20 30 40 50 60
pF1KB8 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI
250 260 270 280 290 300
310 320 330 340
pF1KB8 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA
::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA
310 320 330 340
>>NP_001699 (OMIM: 190900,613522) short-wave-sensitive o (348 aa)
initn: 1064 init1: 1038 opt: 1085 Z-score: 1010.0 bits: 195.4 E(85289): 1.6e-49
Smith-Waterman score: 1085; 45.9% identity (77.5% similar) in 338 aa overlap (9-346:9-341)
10 20 30 40 50 60
pF1KB8 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY
::. :.: ..: .:.. :::..: : : . ::.: ....:::.: ..:
NP_001 MRKMSEEEFYL-FKNISSV--GPWDGPQYHIAPVWAFYLQAAFMGTVFLIGFPLNAMVLV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG
.:...:::: ::::::.:.. . ... . . .. .: .:::::: : ::::..:..
NP_001 ATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVFGRHVCALEGFLGTVA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP
: .. :::. ::.:::.:.:::..::::. .::. : ::..... . ::. ::::.::
NP_001 GLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTIGIGVSIPPFFGWSRFIP
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES
:::::::: :.::. . .::.. ..:. : .:. .: : : ::. ..: .:::::::
NP_001 EGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQES
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB8 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI
:::::::.::.:::..:: .: .:.::::. :.:. .... .. ..:::.::.::: :
NP_001 ATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHGLDLRLVTIPSFFSKSACI
240 250 260 270 280 290
310 320 330 340
pF1KB8 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA
:::.:: .:::::. :.. .: :: . :. . . .:::.: :.
NP_001 YNPIIYCFMNKQFQACIMKMVC-GKA-MTDESDTCSSQKTEVSTVSSTQVGPN
300 310 320 330 340
>>NP_000504 (OMIM: 300821,303700,303800) medium-wave-sen (364 aa)
initn: 977 init1: 977 opt: 1002 Z-score: 934.0 bits: 181.4 E(85289): 2.8e-45
Smith-Waterman score: 1002; 44.3% identity (74.2% similar) in 345 aa overlap (2-346:21-359)
10 20 30 40
pF1KB8 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLA
..:.. : ::.: :.::: :.:..: : . . .
NP_000 MAQQWSLQRLAGRHPQDSYEDSTQSSIFTYTNSNST---RGPFEGPNYHIAPRWVYHLTS
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 AYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHG
..:..... . : :.: .:.. :::: :::.::.::::::: .. . : .. ....:
NP_000 VWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIASTISVVNQVYG
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 YFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTW
:::.: : :::. ..: : .::::.... ::..:::::..: :: . ::.:.::.:
NP_000 YFVLGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGNVRFDAKLAIVGIAFSW
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 VMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFF
. : . .:::. ::::: :.::. ::: : .. . . .:..: ..:. :. :: .
NP_000 IWAAVWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVL
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 CYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGS
:: :. .... .: ::.:: .::::::::::::..::.:: .:: ::: : . .. :
NP_000 CYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAAANPGY
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 NFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTE
: :.. ..::::::::.:::::::..::.:::::.: . ::. . : ...::::
NP_000 PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLF--GKK-VDDGSELSSASKTE
300 310 320 330 340 350
pF1KB8 TSQVAPA
.:.:.
NP_000 VSSVSSVSPA
360
>>NP_064445 (OMIM: 300822,303700,303900) long-wave-sensi (364 aa)
initn: 969 init1: 969 opt: 994 Z-score: 926.7 bits: 180.0 E(85289): 7e-45
Smith-Waterman score: 994; 43.5% identity (74.5% similar) in 345 aa overlap (2-346:21-359)
10 20 30 40
pF1KB8 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLA
..:.. : ::.: :.::: :.:..: : . . .
NP_064 MAQQWSLQRLAGRHPQDSYEDSTQSSIFTYTNSNST---RGPFEGPNYHIAPRWVYHLTS
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 AYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHG
..:..... . : :.: .:.. :::: :::.::.::::::: .. . : .. ... :
NP_064 VWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIASTISIVNQVSG
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 YFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTW
:::.: : :::. ..: : .::::.... ::..:::::..: :: . ::.:.::.:
NP_064 YFVLGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGNVRFDAKLAIVGIAFSW
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 VMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFF
. : . .:::. ::::: :.::. ::: : .. . . .:..: ..:. ::. ::..
NP_064 IWAAVWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIML
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 CYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGS
:: :. .... .: ::.:: .::::::::::::..:..:. .:: ::. : . .. :
NP_064 CYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVVVMIFAYCVCWGPYTFFACFAAANPGY
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 NFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTE
: :.. ..::.:::::.:::::::..::.:::::.: . ::. . : ...::::
NP_064 AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF--GKK-VDDGSELSSASKTE
300 310 320 330 340 350
pF1KB8 TSQVAPA
.:.:.
NP_064 VSSVSSVSPA
360
>>NP_055137 (OMIM: 606695) opsin-3 [Homo sapiens] (402 aa)
initn: 611 init1: 234 opt: 596 Z-score: 562.8 bits: 112.8 E(85289): 1.3e-24
Smith-Waterman score: 596; 31.6% identity (64.3% similar) in 297 aa overlap (31-322:35-325)
10 20 30 40 50 60
pF1KB8 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY
: : . :: . . .:: :.:.:
NP_055 NRSGGHGYWDGGGAAGAEGPAPAGTLSPAPLFSPGTYERLALLLGSIGLLGVGNNLLVLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG
. . ..:::: . .:.:....::.. : : : :. . :.. .:. .:: .:: ..:
NP_055 LYYKFQRLRTPTHLLLVNISLSDLLVSLFGVTFTFVSCLRNGWVWDTVGCVWDGFSGSLF
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 GEIALWSLVVLAIERYV-VVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYI
: ... .:.::: :::. :: . :: . : .... :...:: :. :: ::.:::
NP_055 GIVSIATLTVLAYERYIRVVHARVINFSW----AWRAITYIWLYSLAWAGAPLLGWNRYI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 PEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA----
. .: .:. . ..:. :::...:. ...:. .: :::.......
NP_055 LDVHGLGCTVDWKS--KDANDSSFVLFLFLGCLVVPLGVIAHCYGHILYSIRMLRCVEDL
190 200 210 220 230
240 250 260 270 280 290
pF1KB8 QQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFA
: . : ::....: ..:...::.::.:: . : . . .: : . . .::
NP_055 QTIQVIKILKYEKKLAKMCFLMIFTFLVCWMPYIVICFLVVNGHGHLVTPTISIVSYLFA
240 250 260 270 280 290
300 310 320 330 340
pF1KB8 KSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA
:: ..::::::..: ..:: .: .:
NP_055 KSNTVYNPVIYVFMIRKFRRSLLQLLCLRLLRCQRPAKDLPAAGSEMQIRPIVMSQKDGD
300 310 320 330 340 350
>>NP_006574 (OMIM: 605224) visual pigment-like receptor (337 aa)
initn: 407 init1: 407 opt: 547 Z-score: 518.9 bits: 104.4 E(85289): 3.6e-22
Smith-Waterman score: 547; 29.4% identity (66.2% similar) in 293 aa overlap (36-323:24-311)
10 20 30 40 50 60
pF1KB8 GPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQH
. ...:.:... .... :...: . ...
NP_006 MLRNNLGNSSDSKNEDGSVFSQTEHNIVATYLIMAGMISIISNIIVLGIFIKY
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 KKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIAL
:.:::: : :..::::.:. . :. . ..:.: . :: .::.. . . . : ..
NP_006 KELRTPTNAIIINLAVTDIGVSSIGYPMSAASDLYGSWKFGYAGCQVYAGLNIFFGMASI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 WSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQC
:.:.:..::...: : . :. : : . .:. .: : :. ::. : :.
NP_006 GLLTVVAVDRYLTICLPDVGRRMTTNTYIGLILGAWINGLFWALMPIIGWASYAPDPTGA
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 SCGIDYYTLKPEVNNESFVIY---MFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQ-QESA
.: :.. :..::: : .....: .:. ..:.:: ......:. .... ::
NP_006 TCTINWRK-----NDRSFVSYTMTVIAINFIVPLTVMFYCYYHVTLSIKHHTTSDCTESL
180 190 200 210 220
250 260 270 280 290 300
pF1KB8 TTQKAEK-EVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI
. . ... .::.: .::. ::. : ::. : .. . ... : . : .::::...
NP_006 NRDWSDQIDVTKMSVIMICMFLVAWSPYSIVCLWASFGDPKKIPPPMAIIAPLFAKSSTF
230 240 250 260 270 280
310 320 330 340
pF1KB8 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA
::: ::.. ::.:: ::. . :
NP_006 YNPCIYVVANKKFRRAMLAMFKCQTHQTMPVTSILPMDVSQNPLASGRI
290 300 310 320 330
>>NP_859528 (OMIM: 609042) opsin-5 [Homo sapiens] (354 aa)
initn: 452 init1: 275 opt: 449 Z-score: 429.2 bits: 87.9 E(85289): 3.6e-17
Smith-Waterman score: 449; 27.7% identity (63.0% similar) in 289 aa overlap (35-316:30-316)
10 20 30 40 50 60
pF1KB8 EGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLI-VLGFPINFLTLYVTV
:. ...:.... .: .:. : .::..
NP_859 MALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSS
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 QHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEI
..:: : . . .:::: :: . . : :. . . .::: :: :. . . :
NP_859 RRKKKLRPAEIMTINLAVCDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 ALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGL
.: ........::. .: . . ..:: . .: :..: .. ::.: . :.:: .
NP_859 SLITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPF
120 130 140 150 160 170
190 200 210 220 230
pF1KB8 QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVK----EAAAQQQE
:: .:.. . :... :.. .. . .: .: : : ... :: :.: ...
NP_859 GTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSR
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 SATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFY-IFTHQGSNFGPIFMTI-PAFFAKS
... : ..:...... .::: :.::: :. . : . : :: ... :...:::
NP_859 IHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSI--PIQLSVVPTLLAKS
240 250 260 270 280 290
300 310 320 330 340
pF1KB8 AAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA
::.:::.:: ... .: :
NP_859 AAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEWE
300 310 320 330 340 350
>>XP_016865905 (OMIM: 609042) PREDICTED: opsin-5 isoform (408 aa)
initn: 452 init1: 275 opt: 449 Z-score: 428.5 bits: 88.0 E(85289): 4e-17
Smith-Waterman score: 449; 27.7% identity (63.0% similar) in 289 aa overlap (35-316:30-316)
10 20 30 40 50 60
pF1KB8 EGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLI-VLGFPINFLTLYVTV
:. ...:.... .: .:. : .::..
XP_016 MALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSS
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 QHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEI
..:: : . . .:::: :: . . : :. . . .::: :: :. . . :
XP_016 RRKKKLRPAEIMTINLAVCDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 ALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGL
.: ........::. .: . . ..:: . .: :..: .. ::.: . :.:: .
XP_016 SLITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPF
120 130 140 150 160 170
190 200 210 220 230
pF1KB8 QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVK----EAAAQQQE
:: .:.. . :... :.. .. . .: .: : : ... :: :.: ...
XP_016 GTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSR
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 SATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFY-IFTHQGSNFGPIFMTI-PAFFAKS
... : ..:...... .::: :.::: :. . : . : :: ... :...:::
XP_016 IHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSI--PIQLSVVPTLLAKS
240 250 260 270 280 290
300 310 320 330 340
pF1KB8 AAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA
::.:::.:: ... .: :
XP_016 AAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEDKGRL
300 310 320 330 340 350
>>NP_001166031 (OMIM: 182455) somatostatin receptor type (364 aa)
initn: 381 init1: 114 opt: 431 Z-score: 412.6 bits: 84.9 E(85289): 3e-16
Smith-Waterman score: 431; 29.4% identity (64.1% similar) in 309 aa overlap (38-336:40-333)
10 20 30 40 50 60
pF1KB8 NFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLI-VLGFPINFLTLYVTVQHK
..:. ..::. . :. : :..::...
NP_001 PSWNASSPGAASGGGDNRTLVGPAPSAGARAVLVPVLYLLVCAAGLGGNTLVIYVVLRFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KLRTPLNYILLNLAVADLFMVLG-GFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIAL
:..: : .:::::::....:: : .: .. ... :::. : : . .. ..
NP_001 KMKTVTNIYILNLAVADVLYMLGLPFLATQNAA--SFWPFGPVLCRLVMTLDGVNQFTSV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 WSLVVLAIERYVVVCKPMSNFRFGENH-AIMGVAFTWVMALACAAPPLAGWSRYIPEGLQ
. :.:....::..: .:.:. :. . . : .. : .::..: : . :: .. . ::
NP_001 FCLTVMSVDRYLAVVHPLSSARWRRPRVAKLASAAAWVLSL-CMSLPLLVFAD-VQEGGT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 CSCGIDYYTLKPE---VNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESA
:. . :: . . :.:: :. : :...: .:: :...:: :: . .
NP_001 CNASW------PEPVGLWGAVFIIYTAVLGFFAPLLVICLCY--LLIVVKVRAAGVRVGC
190 200 210 220 230
250 260 270 280 290
pF1KB8 TTQKAEKEVTRMVIIMVIAFLICWVPYASVAFY----IFTHQGSNFGPIFMTIPAFFAKS
. ...:..:::::...:..: ::.:. .: . . .. .. : :... .:.:
NP_001 VRRRSERKVTRMVLVVVLVFAGCWLPFFTVNIVNLAVALPQEPASAGLYFFVVILSYANS
240 250 260 270 280 290
300 310 320 330 340
pF1KB8 AAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA
: :::.: ... .::. . ..: :. : .:.::
NP_001 CA--NPVLYGFLSDNFRQSFQKVLCLRKGS-GAKDADATEPRPDRIRQQQEATPPAHRAA
300 310 320 330 340 350
NP_001 ANGLMQTSKL
360
>>NP_001044 (OMIM: 182455) somatostatin receptor type 5 (364 aa)
initn: 381 init1: 114 opt: 431 Z-score: 412.6 bits: 84.9 E(85289): 3e-16
Smith-Waterman score: 431; 29.4% identity (64.1% similar) in 309 aa overlap (38-336:40-333)
10 20 30 40 50 60
pF1KB8 NFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLI-VLGFPINFLTLYVTVQHK
..:. ..::. . :. : :..::...
NP_001 PSWNASSPGAASGGGDNRTLVGPAPSAGARAVLVPVLYLLVCAAGLGGNTLVIYVVLRFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KLRTPLNYILLNLAVADLFMVLG-GFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIAL
:..: : .:::::::....:: : .: .. ... :::. : : . .. ..
NP_001 KMKTVTNIYILNLAVADVLYMLGLPFLATQNAA--SFWPFGPVLCRLVMTLDGVNQFTSV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 WSLVVLAIERYVVVCKPMSNFRFGENH-AIMGVAFTWVMALACAAPPLAGWSRYIPEGLQ
. :.:....::..: .:.:. :. . . : .. : .::..: : . :: .. . ::
NP_001 FCLTVMSVDRYLAVVHPLSSARWRRPRVAKLASAAAWVLSL-CMSLPLLVFAD-VQEGGT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 CSCGIDYYTLKPE---VNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESA
:. . :: . . :.:: :. : :...: .:: :...:: :: . .
NP_001 CNASW------PEPVGLWGAVFIIYTAVLGFFAPLLVICLCY--LLIVVKVRAAGVRVGC
190 200 210 220 230
250 260 270 280 290
pF1KB8 TTQKAEKEVTRMVIIMVIAFLICWVPYASVAFY----IFTHQGSNFGPIFMTIPAFFAKS
. ...:..:::::...:..: ::.:. .: . . .. .. : :... .:.:
NP_001 VRRRSERKVTRMVLVVVLVFAGCWLPFFTVNIVNLAVALPQEPASAGLYFFVVILSYANS
240 250 260 270 280 290
300 310 320 330 340
pF1KB8 AAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA
: :::.: ... .::. . ..: :. : .:.::
NP_001 CA--NPVLYGFLSDNFRQSFQKVLCLRKGS-GAKDADATEPRPDRIRQQQEATPPAHRAA
300 310 320 330 340 350
NP_001 ANGLMQTSKL
360
348 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:56:12 2016 done: Fri Nov 4 11:56:13 2016
Total Scan time: 6.640 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]