FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8340, 73 aa
  1>>>pF1KB8340 73 - 73 aa - 73 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5578+/-0.000498; mu= 11.1128+/- 0.030
 mean_var=63.6612+/-13.596, 0's: 0 Z-trim(114.0): 80  B-trim: 7 in 1/49
 Lambda= 0.160745
 statistics sampled from 14471 (14569) to 14471 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.448), width:  16
 Scan time:  1.220

The best scores are:                                      opt bits E(32554)
CCDS3507.1 HOPX gene_id:84525|Hs108|chr4           (  73)  480 118.6 3.5e-28
CCDS47062.1 HOPX gene_id:84525|Hs108|chr4          (  91)  480 118.7 4.1e-28
CCDS54767.1 HOPX gene_id:84525|Hs108|chr4          ( 112)  304 77.9 9.3e-16


>>CCDS3507.1 HOPX gene_id:84525|Hs108|chr4                (73 aa)
 initn: 488 init1: 480 opt: 480  Z-score: 619.4  bits: 118.6 E(32554): 3.5e-28
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)

               10        20        30        40        50        60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
               10        20        30        40        50        60

               70   
pF1KB8 SEGLPSECRSVID
       ::::::::::: :
CCDS35 SEGLPSECRSVTD
               70   

>>CCDS47062.1 HOPX gene_id:84525|Hs108|chr4               (91 aa)
 initn: 488 init1: 480 opt: 480  Z-score: 618.2  bits: 118.7 E(32554): 4.1e-28
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:19-91)

                                 10        20        30        40  
pF1KB8                   MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGL
                         ::::::::::::::::::::::::::::::::::::::::::
CCDS47 MLIFLGCYRRRLEERAGTMSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGL
               10        20        30        40        50        60

             50        60        70   
pF1KB8 SEEETQKWFKQRLAKWRRSEGLPSECRSVID
       ::::::::::::::::::::::::::::: :
CCDS47 SEEETQKWFKQRLAKWRRSEGLPSECRSVTD
               70        80        90 

>>CCDS54767.1 HOPX gene_id:84525|Hs108|chr4               (112 aa)
 initn: 336 init1: 304 opt: 304  Z-score: 396.4  bits: 77.9 E(32554): 9.3e-16
Smith-Waterman score: 304; 100.0% identity (100.0% similar) in 48 aa overlap (1-48:19-66)

                                 10        20        30        40  
pF1KB8                   MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGL
                         ::::::::::::::::::::::::::::::::::::::::::
CCDS54 MLIFLGCYRRRLEERAGTMSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGL
               10        20        30        40        50        60

             50        60        70                        
pF1KB8 SEEETQKWFKQRLAKWRRSEGLPSECRSVID                     
       ::::::                                              
CCDS54 SEEETQGSDLISRSKIWHPESSPQREGYPHDSLPCLAFDYFSLLPPQCKEMV
               70        80        90       100       110  




73 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:54:47 2016 done: Fri Nov  4 11:54:47 2016
 Total Scan time:  1.220 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]