Result of FASTA (omim) for
pF1KB8339
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8339, 310 aa
1>>>pF1KB8339 310 - 310 aa - 310 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9909+/-0.000352; mu= 9.1477+/- 0.022
mean_var=131.0134+/-26.224, 0's: 0 Z-trim(117.8): 134 B-trim: 0 in 0/53
Lambda= 0.112051
statistics sampled from 29958 (30110) to 29958 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.353), width: 16
Scan time: 5.710
The best scores are: opt bits E(85289)
NP_009053 (OMIM: 191523,602491) upstream stimulato ( 310) 2006 335.2 1e-91
NP_001263302 (OMIM: 191523,602491) upstream stimul ( 310) 2006 335.2 1e-91
NP_996888 (OMIM: 191523,602491) upstream stimulato ( 251) 1634 275.0 1.1e-73
NP_997174 (OMIM: 600390) upstream stimulatory fact ( 279) 756 133.1 6.3e-31
NP_003358 (OMIM: 600390) upstream stimulatory fact ( 346) 756 133.2 7.5e-31
NP_001308079 (OMIM: 600390) upstream stimulatory f ( 215) 681 120.9 2.3e-27
XP_016882688 (OMIM: 600390) PREDICTED: upstream st ( 284) 662 117.9 2.4e-26
XP_005259254 (OMIM: 600390) PREDICTED: upstream st ( 351) 662 118.0 2.8e-26
XP_011525563 (OMIM: 600390) PREDICTED: upstream st ( 244) 283 56.6 5.9e-08
XP_011525562 (OMIM: 600390) PREDICTED: upstream st ( 258) 281 56.3 7.7e-08
NP_002373 (OMIM: 154950,171300) protein max isofor ( 160) 195 42.2 0.00081
NP_660088 (OMIM: 154950,171300) protein max isofor ( 103) 188 41.0 0.0013
XP_016884411 (OMIM: 600481) PREDICTED: sterol regu ( 749) 199 43.4 0.0017
NP_660087 (OMIM: 154950,171300) protein max isofor ( 151) 187 40.9 0.0019
XP_016884410 (OMIM: 600481) PREDICTED: sterol regu ( 965) 199 43.4 0.0021
XP_011535075 (OMIM: 154950,171300) PREDICTED: prot ( 153) 186 40.8 0.0022
XP_011528649 (OMIM: 600481) PREDICTED: sterol regu (1016) 199 43.5 0.0022
XP_006724373 (OMIM: 600481) PREDICTED: sterol regu (1111) 199 43.5 0.0024
NP_004590 (OMIM: 600481) sterol regulatory element (1141) 199 43.5 0.0024
>>NP_009053 (OMIM: 191523,602491) upstream stimulatory f (310 aa)
initn: 2006 init1: 2006 opt: 2006 Z-score: 1767.6 bits: 335.2 E(85289): 1e-91
Smith-Waterman score: 2006; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)
10 20 30 40 50 60
pF1KB8 MKGQQKTAETEEGTVQIQEGAVATGEDPTSVAIASIQSAATFPDPNVKYVFRTENGGQVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MKGQQKTAETEEGTVQIQEGAVATGEDPTSVAIASIQSAATFPDPNVKYVFRTENGGQVM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 YRVIQVSEGQLDGQTEGTGAISGYPATQSMTQAVIQGAFTSDDAVDTEGTAAETHYTYFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 YRVIQVSEGQLDGQTEGTGAISGYPATQSMTQAVIQGAFTSDDAVDTEGTAAETHYTYFP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 STAVGDGAGGTTSGSTAAVVTTQGSEALLGQATPPGTGQFFVMMSPQEVLQGGSQRSIAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 STAVGDGAGGTTSGSTAAVVTTQGSEALLGQATPPGTGQFFVMMSPQEVLQGGSQRSIAP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RTHPYSPKSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 RTHPYSPKSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GGILSKACDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQQVEDLKNKNLLLRAQLRHHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 GGILSKACDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQQVEDLKNKNLLLRAQLRHHG
250 260 270 280 290 300
310
pF1KB8 LEVVIKNDSN
::::::::::
NP_009 LEVVIKNDSN
310
>>NP_001263302 (OMIM: 191523,602491) upstream stimulator (310 aa)
initn: 2006 init1: 2006 opt: 2006 Z-score: 1767.6 bits: 335.2 E(85289): 1e-91
Smith-Waterman score: 2006; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)
10 20 30 40 50 60
pF1KB8 MKGQQKTAETEEGTVQIQEGAVATGEDPTSVAIASIQSAATFPDPNVKYVFRTENGGQVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKGQQKTAETEEGTVQIQEGAVATGEDPTSVAIASIQSAATFPDPNVKYVFRTENGGQVM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 YRVIQVSEGQLDGQTEGTGAISGYPATQSMTQAVIQGAFTSDDAVDTEGTAAETHYTYFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YRVIQVSEGQLDGQTEGTGAISGYPATQSMTQAVIQGAFTSDDAVDTEGTAAETHYTYFP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 STAVGDGAGGTTSGSTAAVVTTQGSEALLGQATPPGTGQFFVMMSPQEVLQGGSQRSIAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STAVGDGAGGTTSGSTAAVVTTQGSEALLGQATPPGTGQFFVMMSPQEVLQGGSQRSIAP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RTHPYSPKSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTHPYSPKSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GGILSKACDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQQVEDLKNKNLLLRAQLRHHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGILSKACDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQQVEDLKNKNLLLRAQLRHHG
250 260 270 280 290 300
310
pF1KB8 LEVVIKNDSN
::::::::::
NP_001 LEVVIKNDSN
310
>>NP_996888 (OMIM: 191523,602491) upstream stimulatory f (251 aa)
initn: 1634 init1: 1634 opt: 1634 Z-score: 1443.9 bits: 275.0 E(85289): 1.1e-73
Smith-Waterman score: 1634; 100.0% identity (100.0% similar) in 251 aa overlap (60-310:1-251)
30 40 50 60 70 80
pF1KB8 SVAIASIQSAATFPDPNVKYVFRTENGGQVMYRVIQVSEGQLDGQTEGTGAISGYPATQS
::::::::::::::::::::::::::::::
NP_996 MYRVIQVSEGQLDGQTEGTGAISGYPATQS
10 20 30
90 100 110 120 130 140
pF1KB8 MTQAVIQGAFTSDDAVDTEGTAAETHYTYFPSTAVGDGAGGTTSGSTAAVVTTQGSEALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 MTQAVIQGAFTSDDAVDTEGTAAETHYTYFPSTAVGDGAGGTTSGSTAAVVTTQGSEALL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 GQATPPGTGQFFVMMSPQEVLQGGSQRSIAPRTHPYSPKSEAPRTTRDEKRRAQHNEVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 GQATPPGTGQFFVMMSPQEVLQGGSQRSIAPRTHPYSPKSEAPRTTRDEKRRAQHNEVER
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 RRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 RRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLD
160 170 180 190 200 210
270 280 290 300 310
pF1KB8 QLQLDNDVLRQQVEDLKNKNLLLRAQLRHHGLEVVIKNDSN
:::::::::::::::::::::::::::::::::::::::::
NP_996 QLQLDNDVLRQQVEDLKNKNLLLRAQLRHHGLEVVIKNDSN
220 230 240 250
>>NP_997174 (OMIM: 600390) upstream stimulatory factor 2 (279 aa)
initn: 909 init1: 749 opt: 756 Z-score: 676.2 bits: 133.1 E(85289): 6.3e-31
Smith-Waterman score: 891; 51.2% identity (73.6% similar) in 303 aa overlap (4-304:22-273)
10 20 30 40
pF1KB8 MKGQQKTAETEEGTVQIQEGAVATG-EDPTSVAIASIQSAAT
..: :.::: :..:::. . : :. :.:::.:.:.::
NP_997 MDMLDPGLDPAASATAAAAASHDKGPEAEEG-VELQEGGDGPGAEEQTAVAITSVQQAA-
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 FPDPNVKYVFRTE-NGGQVMYRVIQVSEGQLDGQTEGTGAISGYPATQSMTQAVIQGAFT
: : :..: :::: :::: ::::. :.
NP_997 FGDHNIQYQFRTETNGGQ----------------------------------AVIQNPFS
60 70 80
110 120 130 140 150 160
pF1KB8 SDDAVDTEGTAAETHYTYFPSTAVGDGAGGTTSGSTAAVVTTQGSEALLGQATPPGTGQF
. . .:....:....:::...::: .:: :..: .. :. : :::
NP_997 NGGSPAAEAVSGEARFAYFPASSVGD--------TTA--VSVQTTD----QSLQAG-GQF
90 100 110 120
170 180 190 200 210 220
pF1KB8 FVMMSPQEVLQGGSQRSIAPRTHPYSPKSEAPRTTRDEKRRAQHNEVERRRRDKINNWIV
.:::.::.::: :.::.::::::::::: .. :: :::.:::::::::::::::::::::
NP_997 YVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIV
130 140 150 160 170 180
230 240 250 260 270 280
pF1KB8 QLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQ
:::::::::. ...:.: :::::::::::::.::::.:.:..: .. ..::.::..:::
NP_997 QLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQ
190 200 210 220 230 240
290 300 310
pF1KB8 QVEDLKNKNLLLRAQLRHHGLEVVIKNDSN
:.:.:::.: ::::::..:.::.:
NP_997 QIEELKNENALLRAQLQQHNLEMVGEGTRQ
250 260 270
>>NP_003358 (OMIM: 600390) upstream stimulatory factor 2 (346 aa)
initn: 1000 init1: 749 opt: 756 Z-score: 674.9 bits: 133.2 E(85289): 7.5e-31
Smith-Waterman score: 1005; 51.5% identity (74.7% similar) in 336 aa overlap (4-304:22-340)
10 20 30 40
pF1KB8 MKGQQKTAETEEGTVQIQEGAVATG-EDPTSVAIASIQSAAT
..: :.::: :..:::. . : :. :.:::.:.:.::
NP_003 MDMLDPGLDPAASATAAAAASHDKGPEAEEG-VELQEGGDGPGAEEQTAVAITSVQQAA-
10 20 30 40 50
50 60 70 80 90
pF1KB8 FPDPNVKYVFRTE-NGGQVMYRVIQVSEGQLDGQTEGTGAISGYPAT------QSMTQ--
: : :..: :::: ::::: :::.::..:::::: . .::.: .. :..::
NP_003 FGDHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVG
60 70 80 90 100 110
100 110 120
pF1KB8 -------------------------AVIQGAFTSDDAVDTEGTAAETHYTYFPSTAVGDG
::::. :.. . .:....:....:::...:::
NP_003 VDGAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGD-
120 130 140 150 160 170
130 140 150 160 170 180
pF1KB8 AGGTTSGSTAAVVTTQGSEALLGQATPPGTGQFFVMMSPQEVLQGGSQRSIAPRTHPYSP
.:: :..: .. :. : :::.:::.::.::: :.::.::::::::::
NP_003 -------TTA--VSVQTTD----QSLQAG-GQFYVMMTPQDVLQTGTQRTIAPRTHPYSP
180 190 200 210 220
190 200 210 220 230 240
pF1KB8 KSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKA
: .. :: :::.::::::::::::::::::::::::::::::. ...:.: :::::::::
NP_003 KIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKA
230 240 250 260 270 280
250 260 270 280 290 300
pF1KB8 CDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQQVEDLKNKNLLLRAQLRHHGLEVVIKN
::::.::::.:.:..: .. ..::.::..::::.:.:::.: ::::::..:.::.:
NP_003 CDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEG
290 300 310 320 330 340
310
pF1KB8 DSN
NP_003 TRQ
>>NP_001308079 (OMIM: 600390) upstream stimulatory facto (215 aa)
initn: 762 init1: 672 opt: 681 Z-score: 612.3 bits: 120.9 E(85289): 2.3e-27
Smith-Waterman score: 681; 53.6% identity (77.3% similar) in 207 aa overlap (102-304:9-209)
80 90 100 110 120
pF1KB8 DGQTEGTGAISGYPATQSMTQAVIQGAFTSDDAVDTEGTAAETHYTYFPSTAVG----DG
: :... ..:: .: : . : .:
NP_001 MDMLDPGLDPAASATAAAAASH-DKGPEAEEGVELQEG
10 20 30
130 140 150 160 170 180
pF1KB8 AGGTTSGSTAAVVTTQGSEALLGQATPPGTGQFFVMMSPQEVLQGGSQRSIAPRTHPYSP
. : . .::. :. ..: .:. . :: . . : :.::.::::::::::
NP_001 GDGPGAEEQTAVAITSVQQAAFGDHNIQ--YQFRTETNGG---QTGTQRTIAPRTHPYSP
40 50 60 70 80 90
190 200 210 220 230 240
pF1KB8 KSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKA
: .. :: :::.::::::::::::::::::::::::::::::. ...:.: :::::::::
NP_001 KIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKA
100 110 120 130 140 150
250 260 270 280 290 300
pF1KB8 CDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQQVEDLKNKNLLLRAQLRHHGLEVVIKN
::::.::::.:.:..: .. ..::.::..::::.:.:::.: ::::::..:.::.:
NP_001 CDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGEG
160 170 180 190 200 210
310
pF1KB8 DSN
NP_001 TRQ
>>XP_016882688 (OMIM: 600390) PREDICTED: upstream stimul (284 aa)
initn: 815 init1: 655 opt: 662 Z-score: 594.0 bits: 117.9 E(85289): 2.4e-26
Smith-Waterman score: 797; 50.2% identity (71.9% similar) in 281 aa overlap (4-282:22-251)
10 20 30 40
pF1KB8 MKGQQKTAETEEGTVQIQEGAVATG-EDPTSVAIASIQSAAT
..: :.::: :..:::. . : :. :.:::.:.:.::
XP_016 MDMLDPGLDPAASATAAAAASHDKGPEAEEG-VELQEGGDGPGAEEQTAVAITSVQQAA-
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 FPDPNVKYVFRTE-NGGQVMYRVIQVSEGQLDGQTEGTGAISGYPATQSMTQAVIQGAFT
: : :..: :::: :::: ::::. :.
XP_016 FGDHNIQYQFRTETNGGQ----------------------------------AVIQNPFS
60 70 80
110 120 130 140 150 160
pF1KB8 SDDAVDTEGTAAETHYTYFPSTAVGDGAGGTTSGSTAAVVTTQGSEALLGQATPPGTGQF
. . .:....:....:::...::: .:: :..: .. :. : :::
XP_016 NGGSPAAEAVSGEARFAYFPASSVGD--------TTA--VSVQTTD----QSLQAG-GQF
90 100 110 120
170 180 190 200 210 220
pF1KB8 FVMMSPQEVLQGGSQRSIAPRTHPYSPKSEAPRTTRDEKRRAQHNEVERRRRDKINNWIV
.:::.::.::: :.::.::::::::::: .. :: :::.:::::::::::::::::::::
XP_016 YVMMTPQDVLQTGTQRTIAPRTHPYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIV
130 140 150 160 170 180
230 240 250 260 270 280
pF1KB8 QLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQ
:::::::::. ...:.: :::::::::::::.::::.:.:..: .. ..::.::..:::
XP_016 QLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQ
190 200 210 220 230 240
290 300 310
pF1KB8 QVEDLKNKNLLLRAQLRHHGLEVVIKNDSN
::
XP_016 QVGAGPGAGQGPGAPDARRWPSAPLTSVVSARSRS
250 260 270 280
>>XP_005259254 (OMIM: 600390) PREDICTED: upstream stimul (351 aa)
initn: 906 init1: 655 opt: 662 Z-score: 592.7 bits: 118.0 E(85289): 2.8e-26
Smith-Waterman score: 911; 50.6% identity (73.2% similar) in 314 aa overlap (4-282:22-318)
10 20 30 40
pF1KB8 MKGQQKTAETEEGTVQIQEGAVATG-EDPTSVAIASIQSAAT
..: :.::: :..:::. . : :. :.:::.:.:.::
XP_005 MDMLDPGLDPAASATAAAAASHDKGPEAEEG-VELQEGGDGPGAEEQTAVAITSVQQAA-
10 20 30 40 50
50 60 70 80 90
pF1KB8 FPDPNVKYVFRTE-NGGQVMYRVIQVSEGQLDGQTEGTGAISGYPAT------QSMTQ--
: : :..: :::: ::::: :::.::..:::::: . .::.: .. :..::
XP_005 FGDHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVG
60 70 80 90 100 110
100 110 120
pF1KB8 -------------------------AVIQGAFTSDDAVDTEGTAAETHYTYFPSTAVGDG
::::. :.. . .:....:....:::...:::
XP_005 VDGAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGD-
120 130 140 150 160 170
130 140 150 160 170 180
pF1KB8 AGGTTSGSTAAVVTTQGSEALLGQATPPGTGQFFVMMSPQEVLQGGSQRSIAPRTHPYSP
.:: :..: .. :. : :::.:::.::.::: :.::.::::::::::
XP_005 -------TTA--VSVQTTD----QSLQAG-GQFYVMMTPQDVLQTGTQRTIAPRTHPYSP
180 190 200 210 220
190 200 210 220 230 240
pF1KB8 KSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKA
: .. :: :::.::::::::::::::::::::::::::::::. ...:.: :::::::::
XP_005 KIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKA
230 240 250 260 270 280
250 260 270 280 290 300
pF1KB8 CDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQQVEDLKNKNLLLRAQLRHHGLEVVIKN
::::.::::.:.:..: .. ..::.::..:::::
XP_005 CDYIRELRQTNQRMQETFKEAERLQMDNELLRQQVGAGPGAGQGPGAPDARRWPSAPLTS
290 300 310 320 330 340
310
pF1KB8 DSN
XP_005 VVSARSRS
350
>>XP_011525563 (OMIM: 600390) PREDICTED: upstream stimul (244 aa)
initn: 527 init1: 276 opt: 283 Z-score: 263.8 bits: 56.6 E(85289): 5.9e-08
Smith-Waterman score: 532; 44.4% identity (66.9% similar) in 239 aa overlap (4-207:22-243)
10 20 30 40
pF1KB8 MKGQQKTAETEEGTVQIQEGAVATG-EDPTSVAIASIQSAAT
..: :.::: :..:::. . : :. :.:::.:.:.::
XP_011 MDMLDPGLDPAASATAAAAASHDKGPEAEEG-VELQEGGDGPGAEEQTAVAITSVQQAA-
10 20 30 40 50
50 60 70 80 90
pF1KB8 FPDPNVKYVFRTE-NGGQVMYRVIQVSEGQLDGQTEGTGAISGYPAT------QSMTQ--
: : :..: :::: ::::: :::.::..:::::: . .::.: .. :..::
XP_011 FGDHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVG
60 70 80 90 100 110
100 110 120
pF1KB8 -------------------------AVIQGAFTSDDAVDTEGTAAETHYTYFPSTAVGDG
::::. :.. . .:....:....:::...:::
XP_011 VDGAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGD-
120 130 140 150 160 170
130 140 150 160 170 180
pF1KB8 AGGTTSGSTAAVVTTQGSEALLGQATPPGTGQFFVMMSPQEVLQGGSQRSIAPRTHPYSP
.:: :..: .. :. : :::.:::.::.::: :.::.::::::::::
XP_011 -------TTA--VSVQTTD----QSLQAG-GQFYVMMTPQDVLQTGTQRTIAPRTHPYSP
180 190 200 210 220
190 200 210 220 230 240
pF1KB8 KSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKA
: .. :: :::.::::::::
XP_011 KIDGTRTPRDERRRAQHNEVP
230 240
>>XP_011525562 (OMIM: 600390) PREDICTED: upstream stimul (258 aa)
initn: 522 init1: 271 opt: 281 Z-score: 261.7 bits: 56.3 E(85289): 7.7e-08
Smith-Waterman score: 530; 42.6% identity (64.9% similar) in 251 aa overlap (4-219:22-255)
10 20 30 40
pF1KB8 MKGQQKTAETEEGTVQIQEGAVATG-EDPTSVAIASIQSAAT
..: :.::: :..:::. . : :. :.:::.:.:.::
XP_011 MDMLDPGLDPAASATAAAAASHDKGPEAEEG-VELQEGGDGPGAEEQTAVAITSVQQAA-
10 20 30 40 50
50 60 70 80 90
pF1KB8 FPDPNVKYVFRTE-NGGQVMYRVIQVSEGQLDGQTEGTGAISGYPAT------QSMTQ--
: : :..: :::: ::::: :::.::..:::::: . .::.: .. :..::
XP_011 FGDHNIQYQFRTETNGGQVTYRVVQVTDGQLDGQGDTAGAVSVVSTAAFAGGQQAVTQVG
60 70 80 90 100 110
100 110 120
pF1KB8 -------------------------AVIQGAFTSDDAVDTEGTAAETHYTYFPSTAVGDG
::::. :.. . .:....:....:::...:::
XP_011 VDGAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGD-
120 130 140 150 160 170
130 140 150 160 170 180
pF1KB8 AGGTTSGSTAAVVTTQGSEALLGQATPPGTGQFFVMMSPQEVLQGGSQRSIAPRTHPYSP
.:: :..: .. :. : :::.:::.::.::: :.::.::::::::::
XP_011 -------TTA--VSVQTTD----QSLQAG-GQFYVMMTPQDVLQTGTQRTIAPRTHPYSP
180 190 200 210 220
190 200 210 220 230 240
pF1KB8 KSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKA
: .. :: :::.::::::: : .:.
XP_011 KIDGTRTPRDERRRAQHNEGLWSRWGLHCSWVSLG
230 240 250
250 260 270 280 290 300
pF1KB8 CDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQQVEDLKNKNLLLRAQLRHHGLEVVIKN
310 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:54:14 2016 done: Fri Nov 4 11:54:14 2016
Total Scan time: 5.710 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]