Result of FASTA (ccds) for
pF1KB8338
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8338, 272 aa
1>>>pF1KB8338 272 - 272 aa - 272 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1088+/-0.000807; mu= 8.4412+/- 0.049
mean_var=168.8474+/-35.542, 0's: 0 Z-trim(113.4): 152 B-trim: 95 in 1/51
Lambda= 0.098702
statistics sampled from 13839 (14013) to 13839 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.43), width: 16
Scan time: 2.640
The best scores are: opt bits E(32554)
CCDS5409.1 HOXA9 gene_id:3205|Hs108|chr7 ( 272) 1894 281.0 6e-76
CCDS8869.1 HOXC9 gene_id:3225|Hs108|chr12 ( 260) 693 110.0 1.8e-24
CCDS11534.1 HOXB9 gene_id:3219|Hs108|chr17 ( 250) 592 95.6 3.7e-20
CCDS2267.2 HOXD9 gene_id:3235|Hs108|chr2 ( 352) 510 84.1 1.5e-16
CCDS8868.1 HOXC10 gene_id:3226|Hs108|chr12 ( 342) 438 73.8 1.8e-13
CCDS2266.1 HOXD10 gene_id:3236|Hs108|chr2 ( 340) 419 71.1 1.2e-12
CCDS5410.2 HOXA10 gene_id:3206|Hs108|chr7 ( 410) 414 70.5 2.2e-12
>>CCDS5409.1 HOXA9 gene_id:3205|Hs108|chr7 (272 aa)
initn: 1894 init1: 1894 opt: 1894 Z-score: 1477.0 bits: 281.0 E(32554): 6e-76
Smith-Waterman score: 1894; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272)
10 20 30 40 50 60
pF1KB8 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA
190 200 210 220 230 240
250 260 270
pF1KB8 RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
::::::::::::::::::::::::::::::::
CCDS54 RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
250 260 270
>>CCDS8869.1 HOXC9 gene_id:3225|Hs108|chr12 (260 aa)
initn: 800 init1: 537 opt: 693 Z-score: 553.0 bits: 110.0 E(32554): 1.8e-24
Smith-Waterman score: 824; 51.3% identity (70.4% similar) in 277 aa overlap (1-272:1-258)
10 20 30 40 50
pF1KB8 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPP--RQAATLAEHPDFSPCSFQS
:..:: ..:::::: :.. : : :. .:. :.: ..: : .. . . :: :::
CCDS88 MSATGPISNYYVDS-LISHDNEDLLA-SRF-PATGAHPAAARPSGLVPDCSDFPSCSFAP
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 KATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGA
: .::..:: :: . .. .::: :: :: ..: : ::::.:::: ::
CCDS88 KPAVFSTSWAPVPSQSS-----VVYH-----PY-GPQPHLGA---DTRYMRTWLEPLSGA
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 LSFAGLPSS-RPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSE
.:: ..:.. : :..::. .::.:: . . : :: ::: :.. :. :
CCDS88 VSFPSFPAGGRHYALKPDAYPGRRADCGPGEGR--SYPDYMYGSPGELRDRAPQTLPSPE
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 NNAENESGG--DKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDR
.: : .: .::.::.:::.::::::::::::::.:::::::::::::::::::
CCDS88 ADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDR
170 180 190 200 210 220
240 250 260 270
pF1KB8 RYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
::::::.:::::::::::::::::::::.::... :
CCDS88 RYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS
230 240 250 260
>>CCDS11534.1 HOXB9 gene_id:3219|Hs108|chr17 (250 aa)
initn: 704 init1: 485 opt: 592 Z-score: 475.5 bits: 95.6 E(32554): 3.7e-20
Smith-Waterman score: 761; 48.7% identity (70.5% similar) in 271 aa overlap (1-271:1-250)
10 20 30 40 50 60
pF1KB8 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA
:. .:.:..:::::.. . ... ... : .. :: . ::: .: :::: ::
CCDS11 MSISGTLSSYYVDSII--SHESEDAPPAKFPSGQYASS-RQPGH-AEHLEFPSCSFQPKA
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS
:::::: :. .....:. ::: ::..::. : : ..::.:.::::.: .
CCDS11 PVFGASWAPLSPHASGSLPS-VYH-----PYIQPQG-VPPA--ESRYLRTWLEPAPRG--
60 70 80 90 100
130 140 150 160 170 180
pF1KB8 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA
. :.. ..: ::: . :. : :: : : : ...:. : .:
CCDS11 -EAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLETSA-GREAVLSNQRPGYG----DNK
110 120 130 140 150
190 200 210 220 230 240
pF1KB8 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA
:.. :: : .::.::::::::.:::::::::.::::::::::::::::::::.:::
CCDS11 ICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVA
160 170 180 190 200 210
250 260 270
pF1KB8 RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
:::::.:::::::::::::::::.::...:.
CCDS11 RLLNLSERQVKIWFQNRRMKMKKMNKEQGKE
220 230 240 250
>>CCDS2267.2 HOXD9 gene_id:3235|Hs108|chr2 (352 aa)
initn: 688 init1: 494 opt: 510 Z-score: 410.5 bits: 84.1 E(32554): 1.5e-16
Smith-Waterman score: 645; 44.2% identity (57.1% similar) in 312 aa overlap (32-268:49-347)
10 20 30 40 50 60
pF1KB8 ATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKAT
:. ... : ::: :: :. ::: ...
CCDS22 NYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGP--AATAAE---FASCSFAPRSA
20 30 40 50 60 70
70 80 90 100 110 120
pF1KB8 VFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPD-GRYMRSWLEPTPGALS
::.:::. : . :::. .:::: : :.::.: . :::.:::.:: :: .
CCDS22 VFSASWSAV----PSQPPAAAAMSGLYHPYV-PPPPLAASASEPGRYVRSWMEPLPGFPG
80 90 100 110 120
130 140 150 160
pF1KB8 FAGL------------PSSRP--------YGIKPEPLSARRGDCPTLDTHTLSLTDYACG
:: :: : :::::: .: . :. . : : .. . .
CCDS22 GAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPE---TRAAPAPATAASTTSSSSTSLS
130 140 150 160 170 180
170 180
pF1KB8 SPP------VDREKQPSEG------AFSENNAENESGGDKP-------------------
: : ::.: : : .: ...: .:: :
CCDS22 SSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSAC
190 200 210 220 230 240
190 200 210 220
pF1KB8 ---PI--------------------DPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFL
:: :::::::::.::::::::::::::.::::::::::
CCDS22 SDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFL
250 260 270 280 290 300
230 240 250 260 270
pF1KB8 FNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
:::::::::::::::.:::::::::::::::::::::..:..
CCDS22 FNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD
310 320 330 340 350
>>CCDS8868.1 HOXC10 gene_id:3226|Hs108|chr12 (342 aa)
initn: 446 init1: 392 opt: 438 Z-score: 355.2 bits: 73.8 E(32554): 1.8e-13
Smith-Waterman score: 438; 40.9% identity (63.1% similar) in 203 aa overlap (69-267:134-329)
40 50 60 70 80 90
pF1KB8 PRQAATLAEHPDFSPCSFQSKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPV
: : . ::. :.. . ..:
CCDS88 SVKEENVCCMYSAEKRAKSGPEAALYSHPLPESCLGEHEVPVPSYYRASPSYSALDKTPH
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB8 AAAAPDGRY---MRSWLEPTPGALSFAGLPSSRPYGIKPE-PLSARRGDCPTLDTHTLSL
..: : . .:. :.: : : .. . :: : : . :. ::
CCDS88 CSGANDFEAPFEQRASLNPRAEHLESPQLGGKVSF---PETPKSDSQTPSPNEIKTEQSL
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB8 TDYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYT
. ::: ..... . . : ....::. : : .: ..::: :.: ::::::::
CCDS88 AG-PKGSPSESEKERAKAADSSPDTSDNEA---KEEIKAENTTGNWLTAKSGRKKRCPYT
230 240 250 260 270
220 230 240 250 260 270
pF1KB8 KHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
:::::::::::::::::::.:: :... .:::.:::::::::::::.::.:..
CCDS88 KHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELT
280 290 300 310 320 330
CCDS88 SNFNFT
340
>>CCDS2266.1 HOXD10 gene_id:3236|Hs108|chr2 (340 aa)
initn: 412 init1: 383 opt: 419 Z-score: 340.6 bits: 71.1 E(32554): 1.2e-12
Smith-Waterman score: 419; 53.4% identity (73.7% similar) in 133 aa overlap (135-267:203-327)
110 120 130 140 150 160
pF1KB8 GRYMRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPV
::.: :. :: ... : : :. :
CCDS22 SSTVMLQLNPRGAAKPQLSAAQLQMEKKMNEPVS---GQEPTKVSQVES--PEAKGGLPE
180 190 200 210 220
170 180 190 200 210 220
pF1KB8 DREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKE
.: .. : . :.:: : : ..:..::: :.: ::::::::::::::::::
CCDS22 ERSCLAEVSVSSPEVQEKES---KEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKE
230 240 250 260 270 280
230 240 250 260 270
pF1KB8 FLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
:::::::::.:: :... .:::.:::::::::::::.::....
CCDS22 FLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRENRIRELTANLTFS
290 300 310 320 330 340
>>CCDS5410.2 HOXA10 gene_id:3206|Hs108|chr7 (410 aa)
initn: 463 init1: 397 opt: 414 Z-score: 335.8 bits: 70.5 E(32554): 2.2e-12
Smith-Waterman score: 431; 48.8% identity (66.0% similar) in 162 aa overlap (117-267:237-397)
90 100 110 120 130 140
pF1KB8 HHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPT
:: : . : .: . . : :.. .:
CCDS54 GVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRGFDLPPA-LASGSADAAR
210 220 230 240 250 260
150 160 170 180 190
pF1KB8 LDTHTLSLTD--YACGS---PPVDREKQPSEGAFSE-NNAENESGGDKPPIDP-----NN
. : :::: :.: . : .: : . : .::. .: : ..
CCDS54 KERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPEKDSLGNSKGE
270 280 290 300 310 320
200 210 220 230 240 250
pF1KB8 PAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQ
::::: :.: :::::::::::::::::::::::::::.:: :..: ..::.::::::::
CCDS54 NAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQ
330 340 350 360 370 380
260 270
pF1KB8 NRRMKMKKINKDRAKDE
:::::.::.:..
CCDS54 NRRMKLKKMNRENRIRELTANFNFS
390 400 410
272 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:53:40 2016 done: Fri Nov 4 11:53:41 2016
Total Scan time: 2.640 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]