FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8335, 440 aa
  1>>>pF1KB8335 440 - 440 aa - 440 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6643+/-0.000855; mu= 16.4399+/- 0.051
 mean_var=84.9385+/-16.958, 0's: 0 Z-trim(108.6): 47  B-trim: 49 in 1/50
 Lambda= 0.139162
 statistics sampled from 10275 (10322) to 10275 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.317), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(32554)
CCDS2825.1 ZMYND10 gene_id:51364|Hs108|chr3        ( 440) 2968 605.7 2.9e-173
CCDS77747.1 ZMYND10 gene_id:51364|Hs108|chr3       ( 435) 2716 555.1 4.9e-158


>>CCDS2825.1 ZMYND10 gene_id:51364|Hs108|chr3             (440 aa)
 initn: 2968 init1: 2968 opt: 2968  Z-score: 3224.1  bits: 605.7 E(32554): 2.9e-173
Smith-Waterman score: 2968; 99.3% identity (99.8% similar) in 440 aa overlap (1-440:1-440)

               10        20        30        40        50        60
pF1KB8 MGDLELLLPGEAEVLVRGLRSFPLREMGSEGWNQRHENLEKLNMQAILDATVSQGEPIQE
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
CCDS28 MGDLELLLPGEAEVLVRGLRSFPLREMGSEGWNQQHENLEKLNMQAILDATVSQGEPIQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LLVTHGKVPTLVEELIAVEMWKQKVFPVFCRVEDFKPQNTFPIYMVVHHEASIINLLETV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LLVTHGKVPTLVEELIAVEMWKQKVFPVFCRVEDFKPQNTFPIYMVVHHEASIINLLETV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FFHKEVCESAEDTVLDLVDYCHRKLTLLVAQSGCGGPPEGEGSQDSNPMQELQKQAELME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 FFHKEVCESAEDTVLDLVDYCHRKLTLLVAQSGCGGPPEGEGSQDSNPMQELQKQAELME
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FEIALKALSVLRYITDCVDSLSLSTLSRMLSAHNLPCLLVELLEHSPWSRREGGKLQQFE
       :::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS28 FEIALKALSVLRYITDCVDSLSLSTLSRMLSTHNLPCLLVELLEHSPWSRREGGKLQQFE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GSRWHTVAPSEQQKLSKLDGQVWIALYNLLLSPEAQARYCLTSFAKGRLLKLRAFLTDTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 GSRWHTVAPSEQQKLSKLDGQVWIALYNLLLSPEAQARYCLTSFAKGRLLKLRAFLTDTL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 LDQLPNLAHLQSFLAHLTLTETQPPKKDLVLEQIPEIWERLERENRGKWQAIAKHQLQHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LDQLPNLAHLQSFLAHLTLTETQPPKKDLVLEQIPEIWERLERENRGKWQAIAKHQLQHV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 FSPSEQDLRLQARRWAETYRLDVLEAVAPERPRCAYCSAEASKRCSRCQNEWYCCRECQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 FSPSEQDLRLQARRWAETYRLDVLEAVAPERPRCAYCSAEASKRCSRCQNEWYCCRECQV
              370       380       390       400       410       420

              430       440
pF1KB8 KHWEKHGKTCVPAAQGDRAK
       ::::::::::: ::::::::
CCDS28 KHWEKHGKTCVLAAQGDRAK
              430       440

>>CCDS77747.1 ZMYND10 gene_id:51364|Hs108|chr3            (435 aa)
 initn: 2735 init1: 1429 opt: 2716  Z-score: 2950.8  bits: 555.1 E(32554): 4.9e-158
Smith-Waterman score: 2722; 92.4% identity (94.2% similar) in 447 aa overlap (1-440:1-435)

               10        20        30        40        50        60
pF1KB8 MGDLELLLPGEAEVLVRGLRSFPLREMGSEGWNQRHENLEKLNMQAILDATVSQGEPIQE
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
CCDS77 MGDLELLLPGEAEVLVRGLRSFPLREMGSEGWNQQHENLEKLNMQAILDATVSQGEPIQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LLVTHGKVPTLVEELIAVEMWKQKVFPVFCRVEDFKPQNTFPIYMVVHHEASIINLLETV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LLVTHGKVPTLVEELIAVEMWKQKVFPVFCRVEDFKPQNTFPIYMVVHHEASIINLLETV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FFHKEVCESAEDTVLDLVDYCHRKLTLLVAQSGCGGPPEGEGSQDSNPMQELQKQAELME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FFHKEVCESAEDTVLDLVDYCHRKLTLLVAQSGCGGPPEGEGSQDSNPMQELQKQAELME
              130       140       150       160       170       180

              190          200           210       220       230   
pF1KB8 FEIALKALSVLRYITDCVD---SLS----LSTLSRMLSAHNLPCLLVELLEHSPWSRREG
       :::::::::::::::::::   :.:    :. :.:.   : . : ..     ::      
CCDS77 FEIALKALSVLRYITDCVDRQWSVSQPPQLAHLKRIQRLHPV-CWFL-----SP------
              190       200       210       220                    

           240       250       260       270       280       290   
pF1KB8 GKLQQFEGSRWHTVAPSEQQKLSKLDGQVWIALYNLLLSPEAQARYCLTSFAKGRLLKLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GKLQQFEGSRWHTVAPSEQQKLSKLDGQVWIALYNLLLSPEAQARYCLTSFAKGRLLKLR
      230       240       250       260       270       280        

           300       310       320       330       340       350   
pF1KB8 AFLTDTLLDQLPNLAHLQSFLAHLTLTETQPPKKDLVLEQIPEIWERLERENRGKWQAIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AFLTDTLLDQLPNLAHLQSFLAHLTLTETQPPKKDLVLEQIPEIWERLERENRGKWQAIA
      290       300       310       320       330       340        

           360       370       380       390       400       410   
pF1KB8 KHQLQHVFSPSEQDLRLQARRWAETYRLDVLEAVAPERPRCAYCSAEASKRCSRCQNEWY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KHQLQHVFSPSEQDLRLQARRWAETYRLDVLEAVAPERPRCAYCSAEASKRCSRCQNEWY
      350       360       370       380       390       400        

           420       430       440
pF1KB8 CCRECQVKHWEKHGKTCVPAAQGDRAK
       :::::::::::::::::: ::::::::
CCDS77 CCRECQVKHWEKHGKTCVLAAQGDRAK
      410       420       430     




440 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:52:12 2016 done: Fri Nov  4 11:52:13 2016
 Total Scan time:  2.460 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]