Result of FASTA (ccds) for
pF1KB8334
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8334, 188 aa
1>>>pF1KB8334 188 - 188 aa - 188 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8273+/-0.000758; mu= 8.0288+/- 0.046
mean_var=151.0948+/-31.197, 0's: 0 Z-trim(114.1): 26 B-trim: 0 in 0/54
Lambda= 0.104340
statistics sampled from 14629 (14653) to 14629 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.45), width: 16
Scan time: 2.110
The best scores are: opt bits E(32554)
CCDS48129.1 SSX2B gene_id:727837|Hs108|chrX ( 188) 1291 204.8 2.5e-53
CCDS14344.2 SSX2 gene_id:6757|Hs108|chrX ( 188) 1291 204.8 2.5e-53
CCDS14291.1 SSX3 gene_id:10214|Hs108|chrX ( 188) 1161 185.3 1.9e-47
CCDS14289.1 SSX5 gene_id:6758|Hs108|chrX ( 188) 1087 174.1 4.4e-44
CCDS14343.1 SSX7 gene_id:280658|Hs108|chrX ( 188) 1087 174.1 4.4e-44
CCDS14345.2 SSX2 gene_id:6757|Hs108|chrX ( 223) 1082 173.4 8.4e-44
CCDS65267.1 SSX2B gene_id:727837|Hs108|chrX ( 223) 1082 173.4 8.4e-44
CCDS35241.1 SSX4B gene_id:548313|Hs108|chrX ( 188) 1014 163.1 8.9e-41
CCDS35240.1 SSX4 gene_id:6759|Hs108|chrX ( 188) 1014 163.1 8.9e-41
CCDS14290.1 SSX1 gene_id:6756|Hs108|chrX ( 188) 986 158.9 1.7e-39
CCDS14288.1 SSX5 gene_id:6758|Hs108|chrX ( 229) 953 154.0 6e-38
CCDS43935.1 SSX4B gene_id:548313|Hs108|chrX ( 153) 562 95.0 2.3e-20
CCDS43934.1 SSX4 gene_id:6759|Hs108|chrX ( 153) 562 95.0 2.3e-20
>>CCDS48129.1 SSX2B gene_id:727837|Hs108|chrX (188 aa)
initn: 1291 init1: 1291 opt: 1291 Z-score: 1070.9 bits: 204.8 E(32554): 2.5e-53
Smith-Waterman score: 1291; 99.5% identity (99.5% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS48 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB8 SDPEEDDE
::::::::
CCDS48 SDPEEDDE
>>CCDS14344.2 SSX2 gene_id:6757|Hs108|chrX (188 aa)
initn: 1291 init1: 1291 opt: 1291 Z-score: 1070.9 bits: 204.8 E(32554): 2.5e-53
Smith-Waterman score: 1291; 99.5% identity (99.5% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS14 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB8 SDPEEDDE
::::::::
CCDS14 SDPEEDDE
>>CCDS14291.1 SSX3 gene_id:10214|Hs108|chrX (188 aa)
initn: 1161 init1: 1161 opt: 1161 Z-score: 965.1 bits: 185.3 E(32554): 1.9e-47
Smith-Waterman score: 1161; 90.4% identity (94.7% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
:::::.:::::::::::::::::::::::::::::::::::.:::: :::::::::::::
CCDS14 MNGDDTFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::: :: :: :::. ::::::.::::::::::.:::::::::::: ::::::::::::
CCDS14 LGFKAILPSFMRNKRVTDFQGNDFDNDPNRGNQVQRPQMTFGRLQGIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
: :.:::::::::::::.:::::::::::::. :::::::::::::: :::::::::::
CCDS14 NVSKEVPEASGPQNDGKQLCPPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB8 SDPEEDDE
::::::::
CCDS14 SDPEEDDE
>>CCDS14289.1 SSX5 gene_id:6758|Hs108|chrX (188 aa)
initn: 1087 init1: 1087 opt: 1087 Z-score: 904.9 bits: 174.1 E(32554): 4.4e-44
Smith-Waterman score: 1087; 83.5% identity (94.1% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
:::::::.::: ::.:::::.::::::::::::..:::::::::::.:::::::::::::
CCDS14 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::::::::: :::. ::::::.:::::::::::.::::::::::: ::: :.::::::
CCDS14 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
:::. :::::::::.::.: : :: .::::... ::::::.::::::. :::::::::::
CCDS14 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB8 SDPEEDDE
:::.::::
CCDS14 SDPQEDDE
>>CCDS14343.1 SSX7 gene_id:280658|Hs108|chrX (188 aa)
initn: 1087 init1: 1087 opt: 1087 Z-score: 904.9 bits: 174.1 E(32554): 4.4e-44
Smith-Waterman score: 1087; 85.1% identity (92.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
::::::::::: .::::::::::.::::::::::.::::::. ::: :::::::::::::
CCDS14 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::::::::: : : :.::::.::: :.::::::::::: ::: : ::::::::::::
CCDS14 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
:::. :::::: :::::.:::::::.:::::.. ::::::.::::::: :::::::::::
CCDS14 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB8 SDPEEDDE
::::::::
CCDS14 SDPEEDDE
>>CCDS14345.2 SSX2 gene_id:6757|Hs108|chrX (223 aa)
initn: 1137 init1: 1080 opt: 1082 Z-score: 899.9 bits: 173.4 E(32554): 8.4e-44
Smith-Waterman score: 1082; 94.0% identity (97.6% similar) in 167 aa overlap (1-167:1-167)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
:::::::::::::::::::::::::::::::::::: ..... .:
CCDS14 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHN
130 140 150 160 170 180
pF1KB8 SDPEEDDE
CCDS14 IGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGPTDCVRENSW
190 200 210 220
>>CCDS65267.1 SSX2B gene_id:727837|Hs108|chrX (223 aa)
initn: 1137 init1: 1080 opt: 1082 Z-score: 899.9 bits: 173.4 E(32554): 8.4e-44
Smith-Waterman score: 1082; 94.0% identity (97.6% similar) in 167 aa overlap (1-167:1-167)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
:::::::::::::::::::::::::::::::::::: ..... .:
CCDS65 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHN
130 140 150 160 170 180
pF1KB8 SDPEEDDE
CCDS65 IGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGPTDCVRENSW
190 200 210 220
>>CCDS35241.1 SSX4B gene_id:548313|Hs108|chrX (188 aa)
initn: 1014 init1: 1014 opt: 1014 Z-score: 845.5 bits: 163.1 E(32554): 8.9e-41
Smith-Waterman score: 1014; 79.3% identity (89.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
::::::::::: ::: ::..::::::::::::.::::::.:::: ::::: .::.:::
CCDS35 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::.:::::: .::: ::.:::. :: :. ::::::::::: :: : :::::::::::
CCDS35 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
: .:::::::::::::.:::::.:.: :::.. ::::::.::::::: ::::::.::::
CCDS35 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB8 SDPEEDDE
::::::::
CCDS35 SDPEEDDE
>>CCDS35240.1 SSX4 gene_id:6759|Hs108|chrX (188 aa)
initn: 1014 init1: 1014 opt: 1014 Z-score: 845.5 bits: 163.1 E(32554): 8.9e-41
Smith-Waterman score: 1014; 79.3% identity (89.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
::::::::::: ::: ::..::::::::::::.::::::.:::: ::::: .::.:::
CCDS35 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::.:::::: .::: ::.:::. :: :. ::::::::::: :: : :::::::::::
CCDS35 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
: .:::::::::::::.:::::.:.: :::.. ::::::.::::::: ::::::.::::
CCDS35 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB8 SDPEEDDE
::::::::
CCDS35 SDPEEDDE
>>CCDS14290.1 SSX1 gene_id:6756|Hs108|chrX (188 aa)
initn: 986 init1: 986 opt: 986 Z-score: 822.8 bits: 158.9 E(32554): 1.7e-39
Smith-Waterman score: 986; 77.7% identity (88.3% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
:::::.::.:: :. :: .::::::: ::::.::.::: :::: ::::::.:.::::
CCDS14 MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
::::.:::::::::.: ::::::.::: :: :::.::::::::. : ::::::::::.
CCDS14 LGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI
:::. : ::::::::::.: :::: . ::::..:::::::.::::::: :::::::::::
CCDS14 NDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB8 SDPEEDDE
::::::::
CCDS14 SDPEEDDE
188 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:51:33 2016 done: Fri Nov 4 11:51:33 2016
Total Scan time: 2.110 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]