FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8333, 313 aa
  1>>>pF1KB8333 313 - 313 aa - 313 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5266+/-0.000876; mu= 14.5295+/- 0.052
 mean_var=67.8442+/-13.447, 0's: 0 Z-trim(106.2): 68  B-trim: 0 in 0/50
 Lambda= 0.155710
 statistics sampled from 8764 (8834) to 8764 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.271), width:  16
 Scan time:  1.620

The best scores are:                                      opt bits E(32554)
CCDS9623.1 DHRS1 gene_id:115817|Hs108|chr14        ( 313) 2085 477.3 6.7e-135
CCDS43864.1 HSDL2 gene_id:84263|Hs108|chr9         ( 418)  251 65.3 9.1e-11


>>CCDS9623.1 DHRS1 gene_id:115817|Hs108|chr14             (313 aa)
 initn: 2085 init1: 2085 opt: 2085  Z-score: 2535.3  bits: 477.3 E(32554): 6.7e-135
Smith-Waterman score: 2085; 99.7% identity (100.0% similar) in 313 aa overlap (1-313:1-313)

               10        20        30        40        50        60
pF1KB8 MAAPMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MAAPMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 VVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDIN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 NVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMFNVPYGVGKAACDKLAADCAHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 NVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMFNVPYGVGKAACDKLAADCAHE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSAETTELSGKCVVALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSAETTELSGKCVVALA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSLSSVLSHVSGLGWLASYLPSFLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSLSSVLSHVSGLGWLASYLPSFLR
              250       260       270       280       290       300

              310   
pF1KB8 VPRWIIALYTSKF
       ::.::::::::::
CCDS96 VPKWIIALYTSKF
              310   

>>CCDS43864.1 HSDL2 gene_id:84263|Hs108|chr9              (418 aa)
 initn: 189 init1:  96 opt: 251  Z-score: 306.8  bits: 65.3 E(32554): 9.1e-11
Smith-Waterman score: 257; 25.3% identity (57.4% similar) in 289 aa overlap (5-276:8-273)

                  10        20        30            40           50
pF1KB8    MAAPMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGR----H---LDTLRVVAQE
              . : .  .::::::::..:::.  : ::.. :...    :   : :. ..:.:
CCDS43 MLPNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEE
               10        20        30        40        50        60

               60        70        80        90       100       110
pF1KB8 AQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWE
        ...::. .: . :  .:... .  :.. ..  : .:.::::: :   .. ::      .
CCDS43 IEAVGGKALPCIVDVRDEQQISAAVEKAIKKFGG-IDILVNNASA--ISLTNT-----LD
               70        80        90        100         110       

              120       130       140       150          160       
pF1KB8 TPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMF---NVPYGVGK
       ::..  : . ::. :: :. :      .  .  . :. :: : .:. ..   .  : ..:
CCDS43 TPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAYTIAK
            120       130       140       150       160       170  

       170       180       190       200       210       220       
pF1KB8 AACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSAE
        . .  .   :.:.. . ..  .:::   .: .   : :  ..:  : ..      :. .
CCDS43 YGMSMYVLGMAEEFKGE-IAVNALWP---KTAI---HTAAMDMLGGPGIE------SQCR
            180        190          200          210               

       230       240       250       260             270        280
pF1KB8 TTELSGKCVVALATDPNILSLSGKVLPSCDLARRYGLRDVD------GRPVQ-DYLSLSS
        ... .  . ..   :.  :..:. . . .. .. :... :      :.:.: :..    
CCDS43 KVDIIADAAYSIFQKPK--SFTGNFVIDENILKEEGIENFDVYAIKPGHPLQPDFFLDEY
     220       230         240       250       260       270       

              290       300       310                              
pF1KB8 VLSHVSGLGWLASYLPSFLRVPRWIIALYTSKF                           
                                                                   
CCDS43 PEAVSKKVESTGAVPEFKEEKLQLQPKPRSGAVEETFRIVKDSLSDDVVKATQAIYLFEL
       280       290       300       310       320       330       




313 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:51:02 2016 done: Fri Nov  4 11:51:03 2016
 Total Scan time:  1.620 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]