FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8331, 210 aa
  1>>>pF1KB8331 210 - 210 aa - 210 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9768+/-0.000306; mu= 5.3662+/- 0.019
 mean_var=304.5556+/-61.740, 0's: 0 Z-trim(125.7): 38  B-trim: 0 in 0/59
 Lambda= 0.073492
 statistics sampled from 50101 (50167) to 50101 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.845), E-opt: 0.2 (0.588), width:  16
 Scan time:  6.630

The best scores are:                                      opt bits E(85289)
NP_066274 (OMIM: 300396) cancer/testis antigen 2 i ( 210) 1488 169.7 3.1e-42
NP_758965 (OMIM: 300396) cancer/testis antigen 2 i ( 180)  953 112.9 3.4e-25
NP_640343 (OMIM: 300657) cancer/testis antigen 1 [ ( 180)  789 95.5 5.8e-20
NP_001318 (OMIM: 300156) cancer/testis antigen 1 [ ( 180)  789 95.5 5.8e-20


>>NP_066274 (OMIM: 300396) cancer/testis antigen 2 isofo  (210 aa)
 initn: 1488 init1: 1488 opt: 1488  Z-score: 879.3  bits: 169.7 E(85289): 3.1e-42
Smith-Waterman score: 1488; 99.5% identity (100.0% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KB8 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKASEQRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_066 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQRP
              130       140       150       160       170       180

              190       200       210
pF1KB8 GTPGPPPPEGAQGDGCRGVAFNVMFSAPHI
       ::::::::::::::::::::::::::::::
NP_066 GTPGPPPPEGAQGDGCRGVAFNVMFSAPHI
              190       200       210

>>NP_758965 (OMIM: 300396) cancer/testis antigen 2 isofo  (180 aa)
 initn: 953 init1: 953 opt: 953  Z-score: 573.4  bits: 112.9 E(85289): 3.4e-25
Smith-Waterman score: 953; 95.7% identity (97.2% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KB8 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_758 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_758 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKASEQRP
       ::::::::::::::. .   :                                       
NP_758 AVLKDFTVSGNLLFIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR
              130       140       150       160       170       180

>>NP_640343 (OMIM: 300657) cancer/testis antigen 1 [Homo  (180 aa)
 initn: 789 init1: 789 opt: 789  Z-score: 479.4  bits: 95.5 E(85289): 5.8e-20
Smith-Waterman score: 789; 78.0% identity (90.8% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KB8 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
NP_640 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG
       ::::::::::. .: : :::: :.:::::....:::..::::::.:: :..:: ::: ::
NP_640 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKASEQRP
       ..::.::::::.: . .   :                                       
NP_640 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
              130       140       150       160       170       180

>>NP_001318 (OMIM: 300156) cancer/testis antigen 1 [Homo  (180 aa)
 initn: 789 init1: 789 opt: 789  Z-score: 479.4  bits: 95.5 E(85289): 5.8e-20
Smith-Waterman score: 789; 78.0% identity (90.8% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KB8 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
NP_001 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG
       ::::::::::. .: : :::: :.:::::....:::..::::::.:: :..:: ::: ::
NP_001 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKASEQRP
       ..::.::::::.: . .   :                                       
NP_001 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
              130       140       150       160       170       180




210 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:49:07 2016 done: Fri Nov  4 11:49:08 2016
 Total Scan time:  6.630 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]