FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8331, 210 aa
  1>>>pF1KB8331 210 - 210 aa - 210 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5584+/-0.000748; mu= 8.4613+/- 0.046
 mean_var=276.1282+/-57.321, 0's: 0 Z-trim(118.4): 28  B-trim: 176 in 1/53
 Lambda= 0.077183
 statistics sampled from 19302 (19329) to 19302 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.849), E-opt: 0.2 (0.594), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS14759.1 CTAG2 gene_id:30848|Hs108|chrX         ( 210) 1488 177.3 6.3e-45
CCDS35455.1 CTAG2 gene_id:30848|Hs108|chrX         ( 180)  953 117.6 4.9e-27
CCDS44025.1 CTAG1A gene_id:246100|Hs108|chrX       ( 180)  789 99.3 1.5e-21
CCDS14758.1 CTAG1B gene_id:1485|Hs108|chrX         ( 180)  789 99.3 1.5e-21


>>CCDS14759.1 CTAG2 gene_id:30848|Hs108|chrX              (210 aa)
 initn: 1488 init1: 1488 opt: 1488  Z-score: 920.1  bits: 177.3 E(32554): 6.3e-45
Smith-Waterman score: 1488; 99.5% identity (100.0% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KB8 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKASEQRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS14 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQRP
              130       140       150       160       170       180

              190       200       210
pF1KB8 GTPGPPPPEGAQGDGCRGVAFNVMFSAPHI
       ::::::::::::::::::::::::::::::
CCDS14 GTPGPPPPEGAQGDGCRGVAFNVMFSAPHI
              190       200       210

>>CCDS35455.1 CTAG2 gene_id:30848|Hs108|chrX              (180 aa)
 initn: 953 init1: 953 opt: 953  Z-score: 598.9  bits: 117.6 E(32554): 4.9e-27
Smith-Waterman score: 953; 95.7% identity (97.2% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KB8 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKASEQRP
       ::::::::::::::. .   :                                       
CCDS35 AVLKDFTVSGNLLFIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR
              130       140       150       160       170       180

>>CCDS44025.1 CTAG1A gene_id:246100|Hs108|chrX            (180 aa)
 initn: 789 init1: 789 opt: 789  Z-score: 500.2  bits: 99.3 E(32554): 1.5e-21
Smith-Waterman score: 789; 78.0% identity (90.8% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KB8 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS44 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG
       ::::::::::. .: : :::: :.:::::....:::..::::::.:: :..:: ::: ::
CCDS44 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKASEQRP
       ..::.::::::.: . .   :                                       
CCDS44 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
              130       140       150       160       170       180

>>CCDS14758.1 CTAG1B gene_id:1485|Hs108|chrX              (180 aa)
 initn: 789 init1: 789 opt: 789  Z-score: 500.2  bits: 99.3 E(32554): 1.5e-21
Smith-Waterman score: 789; 78.0% identity (90.8% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KB8 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS14 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG
       ::::::::::. .: : :::: :.:::::....:::..::::::.:: :..:: ::: ::
CCDS14 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKASEQRP
       ..::.::::::.: . .   :                                       
CCDS14 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
              130       140       150       160       170       180




210 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:49:06 2016 done: Fri Nov  4 11:49:07 2016
 Total Scan time:  2.520 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]