Result of FASTA (omim) for
pF1KB8321
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8321, 292 aa
1>>>pF1KB8321 292 - 292 aa - 292 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2499+/-0.00044; mu= 14.9255+/- 0.027
mean_var=61.0867+/-12.184, 0's: 0 Z-trim(109.8): 65 B-trim: 126 in 1/51
Lambda= 0.164097
statistics sampled from 17995 (18057) to 17995 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.574), E-opt: 0.2 (0.212), width: 16
Scan time: 5.890
The best scores are: opt bits E(85289)
NP_004770 (OMIM: 603731) CCR4-NOT transcription co ( 292) 1931 466.0 3.8e-131
NP_001288002 (OMIM: 603731) CCR4-NOT transcription ( 292) 1931 466.0 3.8e-131
XP_016865538 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 292) 1931 466.0 3.8e-131
XP_016865540 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 292) 1931 466.0 3.8e-131
XP_016865539 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 292) 1931 466.0 3.8e-131
XP_016865537 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 292) 1931 466.0 3.8e-131
NP_037486 (OMIM: 604913) CCR4-NOT transcription co ( 285) 1496 363.0 3.7e-100
NP_001309021 (OMIM: 604913) CCR4-NOT transcription ( 285) 1496 363.0 3.7e-100
NP_001309019 (OMIM: 604913) CCR4-NOT transcription ( 285) 1496 363.0 3.7e-100
NP_001309020 (OMIM: 604913) CCR4-NOT transcription ( 285) 1496 363.0 3.7e-100
XP_005273538 (OMIM: 604913) PREDICTED: CCR4-NOT tr ( 285) 1496 363.0 3.7e-100
NP_001309018 (OMIM: 604913) CCR4-NOT transcription ( 244) 1349 328.2 9.7e-90
NP_473367 (OMIM: 604913) CCR4-NOT transcription co ( 244) 1349 328.2 9.7e-90
NP_001309016 (OMIM: 604913) CCR4-NOT transcription ( 244) 1349 328.2 9.7e-90
NP_001309017 (OMIM: 604913) CCR4-NOT transcription ( 244) 1349 328.2 9.7e-90
NP_001309023 (OMIM: 604913) CCR4-NOT transcription ( 256) 1348 328.0 1.2e-89
XP_011536008 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 186) 1230 300.0 2.3e-81
NP_001288004 (OMIM: 603731) CCR4-NOT transcription ( 186) 1230 300.0 2.3e-81
NP_001288009 (OMIM: 603731) CCR4-NOT transcription ( 186) 1230 300.0 2.3e-81
NP_001288012 (OMIM: 603731) CCR4-NOT transcription ( 186) 1230 300.0 2.3e-81
NP_001288006 (OMIM: 603731) CCR4-NOT transcription ( 186) 1230 300.0 2.3e-81
NP_001288011 (OMIM: 603731) CCR4-NOT transcription ( 186) 1230 300.0 2.3e-81
XP_011536010 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 186) 1230 300.0 2.3e-81
XP_016865546 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 186) 1230 300.0 2.3e-81
NP_001309024 (OMIM: 604913) CCR4-NOT transcription ( 204) 1049 257.1 2e-68
NP_001309025 (OMIM: 604913) CCR4-NOT transcription ( 204) 1049 257.1 2e-68
NP_001309026 (OMIM: 604913) CCR4-NOT transcription ( 204) 1049 257.1 2e-68
NP_001309022 (OMIM: 604913) CCR4-NOT transcription ( 307) 914 225.3 1.2e-58
NP_001309028 (OMIM: 604913) CCR4-NOT transcription ( 163) 902 222.3 4.9e-58
NP_001309029 (OMIM: 604913) CCR4-NOT transcription ( 163) 902 222.3 4.9e-58
NP_001309027 (OMIM: 604913) CCR4-NOT transcription ( 163) 902 222.3 4.9e-58
XP_016865541 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 238) 886 218.6 9.4e-57
XP_016865544 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 238) 886 218.6 9.4e-57
XP_016865542 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 238) 886 218.6 9.4e-57
NP_001288003 (OMIM: 603731) CCR4-NOT transcription ( 238) 886 218.6 9.4e-57
XP_016865545 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 238) 886 218.6 9.4e-57
XP_005268584 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 238) 886 218.6 9.4e-57
XP_016865543 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 238) 886 218.6 9.4e-57
XP_016865547 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 128) 837 206.9 1.7e-53
NP_001288015 (OMIM: 603731) CCR4-NOT transcription ( 128) 837 206.9 1.7e-53
>>NP_004770 (OMIM: 603731) CCR4-NOT transcription comple (292 aa)
initn: 1931 init1: 1931 opt: 1931 Z-score: 2475.5 bits: 466.0 E(85289): 3.8e-131
Smith-Waterman score: 1931; 99.7% identity (99.7% similar) in 292 aa overlap (1-292:1-292)
10 20 30 40 50 60
pF1KB8 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYTVKLLTDSRLPEEEHE
:::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
NP_004 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
250 260 270 280 290
>>NP_001288002 (OMIM: 603731) CCR4-NOT transcription com (292 aa)
initn: 1931 init1: 1931 opt: 1931 Z-score: 2475.5 bits: 466.0 E(85289): 3.8e-131
Smith-Waterman score: 1931; 99.7% identity (99.7% similar) in 292 aa overlap (1-292:1-292)
10 20 30 40 50 60
pF1KB8 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYTVKLLTDSRLPEEEHE
:::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
NP_001 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
250 260 270 280 290
>>XP_016865538 (OMIM: 603731) PREDICTED: CCR4-NOT transc (292 aa)
initn: 1931 init1: 1931 opt: 1931 Z-score: 2475.5 bits: 466.0 E(85289): 3.8e-131
Smith-Waterman score: 1931; 99.7% identity (99.7% similar) in 292 aa overlap (1-292:1-292)
10 20 30 40 50 60
pF1KB8 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYTVKLLTDSRLPEEEHE
:::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
XP_016 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
250 260 270 280 290
>>XP_016865540 (OMIM: 603731) PREDICTED: CCR4-NOT transc (292 aa)
initn: 1931 init1: 1931 opt: 1931 Z-score: 2475.5 bits: 466.0 E(85289): 3.8e-131
Smith-Waterman score: 1931; 99.7% identity (99.7% similar) in 292 aa overlap (1-292:1-292)
10 20 30 40 50 60
pF1KB8 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYTVKLLTDSRLPEEEHE
:::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
XP_016 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
250 260 270 280 290
>>XP_016865539 (OMIM: 603731) PREDICTED: CCR4-NOT transc (292 aa)
initn: 1931 init1: 1931 opt: 1931 Z-score: 2475.5 bits: 466.0 E(85289): 3.8e-131
Smith-Waterman score: 1931; 99.7% identity (99.7% similar) in 292 aa overlap (1-292:1-292)
10 20 30 40 50 60
pF1KB8 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYTVKLLTDSRLPEEEHE
:::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
XP_016 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
250 260 270 280 290
>>XP_016865537 (OMIM: 603731) PREDICTED: CCR4-NOT transc (292 aa)
initn: 1931 init1: 1931 opt: 1931 Z-score: 2475.5 bits: 466.0 E(85289): 3.8e-131
Smith-Waterman score: 1931; 99.7% identity (99.7% similar) in 292 aa overlap (1-292:1-292)
10 20 30 40 50 60
pF1KB8 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYTVKLLTDSRLPEEEHE
:::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
XP_016 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
250 260 270 280 290
>>NP_037486 (OMIM: 604913) CCR4-NOT transcription comple (285 aa)
initn: 1494 init1: 1494 opt: 1496 Z-score: 1919.1 bits: 363.0 E(85289): 3.7e-100
Smith-Waterman score: 1496; 76.8% identity (91.8% similar) in 280 aa overlap (1-280:1-280)
10 20 30 40 50 60
pF1KB8 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
:::: :..:: :::::: ::.:::.:::... .:.:.::::::::::.::::::::. ::
NP_037 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
::::::::::::::::::::: ::.:::: : .:::::::::::::::.::::.::..::
NP_037 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYTVKLLTDSRLPEEEHE
.::.:::::::.: .:::::::::::::..:::::::::::::: .:.::.: ::::: .
NP_037 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
::.:: :::: ::::::::::::::::::::::.::.:.::: ::::::::::::::::.
NP_037 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
:.:.:::: ::::::::.:::::.: . :: .. .:.
NP_037 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
250 260 270 280
>>NP_001309021 (OMIM: 604913) CCR4-NOT transcription com (285 aa)
initn: 1494 init1: 1494 opt: 1496 Z-score: 1919.1 bits: 363.0 E(85289): 3.7e-100
Smith-Waterman score: 1496; 76.8% identity (91.8% similar) in 280 aa overlap (1-280:1-280)
10 20 30 40 50 60
pF1KB8 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
:::: :..:: :::::: ::.:::.:::... .:.:.::::::::::.::::::::. ::
NP_001 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
::::::::::::::::::::: ::.:::: : .:::::::::::::::.::::.::..::
NP_001 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYTVKLLTDSRLPEEEHE
.::.:::::::.: .:::::::::::::..:::::::::::::: .:.::.: ::::: .
NP_001 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
::.:: :::: ::::::::::::::::::::::.::.:.::: ::::::::::::::::.
NP_001 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
:.:.:::: ::::::::.:::::.: . :: .. .:.
NP_001 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
250 260 270 280
>>NP_001309019 (OMIM: 604913) CCR4-NOT transcription com (285 aa)
initn: 1494 init1: 1494 opt: 1496 Z-score: 1919.1 bits: 363.0 E(85289): 3.7e-100
Smith-Waterman score: 1496; 76.8% identity (91.8% similar) in 280 aa overlap (1-280:1-280)
10 20 30 40 50 60
pF1KB8 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
:::: :..:: :::::: ::.:::.:::... .:.:.::::::::::.::::::::. ::
NP_001 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
::::::::::::::::::::: ::.:::: : .:::::::::::::::.::::.::..::
NP_001 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYTVKLLTDSRLPEEEHE
.::.:::::::.: .:::::::::::::..:::::::::::::: .:.::.: ::::: .
NP_001 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
::.:: :::: ::::::::::::::::::::::.::.:.::: ::::::::::::::::.
NP_001 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
:.:.:::: ::::::::.:::::.: . :: .. .:.
NP_001 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
250 260 270 280
>>NP_001309020 (OMIM: 604913) CCR4-NOT transcription com (285 aa)
initn: 1494 init1: 1494 opt: 1496 Z-score: 1919.1 bits: 363.0 E(85289): 3.7e-100
Smith-Waterman score: 1496; 76.8% identity (91.8% similar) in 280 aa overlap (1-280:1-280)
10 20 30 40 50 60
pF1KB8 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
:::: :..:: :::::: ::.:::.:::... .:.:.::::::::::.::::::::. ::
NP_001 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
::::::::::::::::::::: ::.:::: : .:::::::::::::::.::::.::..::
NP_001 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYTVKLLTDSRLPEEEHE
.::.:::::::.: .:::::::::::::..:::::::::::::: .:.::.: ::::: .
NP_001 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
::.:: :::: ::::::::::::::::::::::.::.:.::: ::::::::::::::::.
NP_001 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
:.:.:::: ::::::::.:::::.: . :: .. .:.
NP_001 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
250 260 270 280
292 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:43:54 2016 done: Fri Nov 4 11:43:55 2016
Total Scan time: 5.890 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]