Result of FASTA (ccds) for
pF1KB8321
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8321, 292 aa
1>>>pF1KB8321 292 - 292 aa - 292 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3439+/- 0.001; mu= 14.4903+/- 0.060
mean_var=58.2313+/-11.573, 0's: 0 Z-trim(102.6): 27 B-trim: 0 in 0/51
Lambda= 0.168072
statistics sampled from 7032 (7043) to 7032 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.592), E-opt: 0.2 (0.216), width: 16
Scan time: 2.340
The best scores are: opt bits E(32554)
CCDS4329.1 CNOT8 gene_id:9337|Hs108|chr5 ( 292) 1931 476.8 8.3e-135
CCDS6000.2 CNOT7 gene_id:29883|Hs108|chr8 ( 285) 1496 371.3 4.6e-103
CCDS55202.1 CNOT7 gene_id:29883|Hs108|chr8 ( 244) 1349 335.6 2.1e-92
CCDS78074.1 CNOT8 gene_id:9337|Hs108|chr5 ( 186) 1230 306.7 8.2e-84
CCDS75361.1 CNOT8 gene_id:9337|Hs108|chr5 ( 238) 886 223.4 1.3e-58
CCDS78075.1 CNOT8 gene_id:9337|Hs108|chr5 ( 128) 837 211.4 2.8e-55
>>CCDS4329.1 CNOT8 gene_id:9337|Hs108|chr5 (292 aa)
initn: 1931 init1: 1931 opt: 1931 Z-score: 2533.7 bits: 476.8 E(32554): 8.3e-135
Smith-Waterman score: 1931; 99.7% identity (99.7% similar) in 292 aa overlap (1-292:1-292)
10 20 30 40 50 60
pF1KB8 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYTVKLLTDSRLPEEEHE
:::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
CCDS43 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
250 260 270 280 290
>>CCDS6000.2 CNOT7 gene_id:29883|Hs108|chr8 (285 aa)
initn: 1494 init1: 1494 opt: 1496 Z-score: 1963.8 bits: 371.3 E(32554): 4.6e-103
Smith-Waterman score: 1496; 76.8% identity (91.8% similar) in 280 aa overlap (1-280:1-280)
10 20 30 40 50 60
pF1KB8 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
:::: :..:: :::::: ::.:::.:::... .:.:.::::::::::.::::::::. ::
CCDS60 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
::::::::::::::::::::: ::.:::: : .:::::::::::::::.::::.::..::
CCDS60 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYTVKLLTDSRLPEEEHE
.::.:::::::.: .:::::::::::::..:::::::::::::: .:.::.: ::::: .
CCDS60 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
::.:: :::: ::::::::::::::::::::::.::.:.::: ::::::::::::::::.
CCDS60 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
:.:.:::: ::::::::.:::::.: . :: .. .:.
CCDS60 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
250 260 270 280
>>CCDS55202.1 CNOT7 gene_id:29883|Hs108|chr8 (244 aa)
initn: 1395 init1: 1349 opt: 1349 Z-score: 1772.3 bits: 335.6 E(32554): 2.1e-92
Smith-Waterman score: 1349; 79.5% identity (93.9% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KB8 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
:::: :..:: :::::: ::.:::.:::... .:.:.::::::::::.::::::::. ::
CCDS55 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
::::::::::::::::::::: ::.:::: : .:::::::::::::::.::::.::..::
CCDS55 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYTVKLLTDSRLPEEEHE
.::.:::::::.: .:::::::::::::..:::::::::::::: .:.::.: ::::: .
CCDS55 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
::.:: :::: ::::::::::::::::::::::.::.:.::: ::::::::::::::::.
CCDS55 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
:.:.
CCDS55 MREV
>>CCDS78074.1 CNOT8 gene_id:9337|Hs108|chr5 (186 aa)
initn: 1230 init1: 1230 opt: 1230 Z-score: 1618.2 bits: 306.7 E(32554): 8.2e-84
Smith-Waterman score: 1230; 99.5% identity (99.5% similar) in 186 aa overlap (107-292:1-186)
80 90 100 110 120 130
pF1KB8 LGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHF
::::::::::::::::::::::::::::::
CCDS78 MYSQDSIDLLANSGLQFQKHEEEGIDTLHF
10 20 30
140 150 160 170 180 190
pF1KB8 AELLMTSGVVLCDNVKWLSFHSGYDFGYTVKLLTDSRLPEEEHEFFHILNLFFPSIYDVK
:::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::
CCDS78 AELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVK
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB8 YLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 YLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYC
100 110 120 130 140 150
260 270 280 290
pF1KB8 GRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
::::::::::::::::::::::::::::::::::::
CCDS78 GRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
160 170 180
>>CCDS75361.1 CNOT8 gene_id:9337|Hs108|chr5 (238 aa)
initn: 886 init1: 886 opt: 886 Z-score: 1165.7 bits: 223.4 E(32554): 1.3e-58
Smith-Waterman score: 1453; 81.2% identity (81.2% similar) in 292 aa overlap (1-292:1-238)
10 20 30 40 50 60
pF1KB8 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLT----------------
70 80 90 100
130 140 150 160 170 180
pF1KB8 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYTVKLLTDSRLPEEEHE
:::::: :::::::::::::::
CCDS75 --------------------------------------GYDFGYMVKLLTDSRLPEEEHE
110 120
190 200 210 220 230 240
pF1KB8 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
130 140 150 160 170 180
250 260 270 280 290
pF1KB8 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
190 200 210 220 230
>>CCDS78075.1 CNOT8 gene_id:9337|Hs108|chr5 (128 aa)
initn: 837 init1: 837 opt: 837 Z-score: 1105.8 bits: 211.4 E(32554): 2.8e-55
Smith-Waterman score: 837; 100.0% identity (100.0% similar) in 127 aa overlap (166-292:2-128)
140 150 160 170 180 190
pF1KB8 FAELLMTSGVVLCDNVKWLSFHSGYDFGYTVKLLTDSRLPEEEHEFFHILNLFFPSIYDV
::::::::::::::::::::::::::::::
CCDS78 MVKLLTDSRLPEEEHEFFHILNLFFPSIYDV
10 20 30
200 210 220 230 240 250
pF1KB8 KYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKY
40 50 60 70 80 90
260 270 280 290
pF1KB8 CGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
:::::::::::::::::::::::::::::::::::::
CCDS78 CGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
100 110 120
292 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:43:54 2016 done: Fri Nov 4 11:43:54 2016
Total Scan time: 2.340 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]