FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8319, 299 aa
  1>>>pF1KB8319 299 - 299 aa - 299 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7445+/-0.00033; mu= 14.4711+/- 0.021
 mean_var=90.5126+/-17.892, 0's: 0 Z-trim(117.0): 4  B-trim: 436 in 1/53
 Lambda= 0.134809
 statistics sampled from 28638 (28642) to 28638 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.336), width:  16
 Scan time:  5.790

The best scores are:                                      opt bits E(85289)
NP_001295276 (OMIM: 608943) anamorsin isoform 2 [H ( 299) 1940 387.0 2.5e-107
NP_064709 (OMIM: 608943) anamorsin isoform 1 [Homo ( 312) 1606 322.0 9.1e-88
XP_005256120 (OMIM: 608943) PREDICTED: anamorsin i ( 253) 1248 252.3   7e-67
NP_001295287 (OMIM: 608943) anamorsin isoform 3 [H ( 266)  914 187.4 2.6e-47


>>NP_001295276 (OMIM: 608943) anamorsin isoform 2 [Homo   (299 aa)
 initn: 1940 init1: 1940 opt: 1940  Z-score: 2048.0  bits: 387.0 E(85289): 2.5e-107
Smith-Waterman score: 1940; 99.0% identity (99.3% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KB8 MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQCLVPGSTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQCLVPGSTT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQRE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PLTPEEVQFVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITKKSSPSVKPAVDPA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITKKSSPSVKPAVDPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 AAKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLRAASCGEGKKRKACKNCTCGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLRAASCGEGKKRKACKNCTCGL
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KB8 AEELEKEKSREQMSSQPKSACGNCYLGDAFRCASCTYLGMPAFKPGEKVLLSDSNLNDA
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::.::
NP_001 AEELEKEKSREQMSSQPKSACGNCYLGDAFRCASCPYLGMPAFKPGEKVLLSDSNLHDA
              250       260       270       280       290         

>>NP_064709 (OMIM: 608943) anamorsin isoform 1 [Homo sap  (312 aa)
 initn: 1603 init1: 1603 opt: 1606  Z-score: 1696.7  bits: 322.0 E(85289): 9.1e-88
Smith-Waterman score: 1890; 94.6% identity (94.9% similar) in 312 aa overlap (1-299:1-312)

               10        20        30        40        50          
pF1KB8 MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQC-------
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
NP_064 MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSF
               10        20        30        40        50        60

                  60        70        80        90       100       
pF1KB8 ------LVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALT
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 DIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALT
               70        80        90       100       110       120

       110       120       130       140       150       160       
pF1KB8 LSGLVEVKELQREPLTPEEVQFVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITK
       ::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::
NP_064 LSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITK
              130       140       150       160       170       180

       170       180       190       200       210       220       
pF1KB8 KSSPSVKPAVDPAAAKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLRAASCGEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 KSSPSVKPAVDPAAAKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLRAASCGEG
              190       200       210       220       230       240

       230       240       250       260       270       280       
pF1KB8 KKRKACKNCTCGLAEELEKEKSREQMSSQPKSACGNCYLGDAFRCASCTYLGMPAFKPGE
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_064 KKRKACKNCTCGLAEELEKEKSREQMSSQPKSACGNCYLGDAFRCASCPYLGMPAFKPGE
              250       260       270       280       290       300

       290         
pF1KB8 KVLLSDSNLNDA
       :::::::::.::
NP_064 KVLLSDSNLHDA
              310  

>>XP_005256120 (OMIM: 608943) PREDICTED: anamorsin isofo  (253 aa)
 initn: 1248 init1: 1248 opt: 1248  Z-score: 1321.7  bits: 252.3 E(85289): 7e-67
Smith-Waterman score: 1248; 99.0% identity (99.0% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KB8 MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQCLVPGSTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQCLVPGSTT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQRE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PLTPEEVQFVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITKKSSPSVKPAVDPA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITKKSSPSVKPAVDPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 AAKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLRAASCGEGKKRKACKNCTCGL
       ::::::::::::::::: :                                         
XP_005 AAKLWTLSANDMEDDSMHLWPCRRTGKREVKGTDELPTQVSLWKLLPGRCLPLCQLPLPW
              190       200       210       220       230       240

>>NP_001295287 (OMIM: 608943) anamorsin isoform 3 [Homo   (266 aa)
 initn: 1221 init1: 907 opt: 914  Z-score: 970.3  bits: 187.4 E(85289): 2.6e-47
Smith-Waterman score: 1198; 92.5% identity (92.5% similar) in 212 aa overlap (1-199:1-212)

               10        20        30        40        50          
pF1KB8 MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQC-------
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
NP_001 MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSF
               10        20        30        40        50        60

                  60        70        80        90       100       
pF1KB8 ------LVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALT
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALT
               70        80        90       100       110       120

       110       120       130       140       150       160       
pF1KB8 LSGLVEVKELQREPLTPEEVQFVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITK
       ::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::
NP_001 LSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITK
              130       140       150       160       170       180

       170       180       190       200       210       220       
pF1KB8 KSSPSVKPAVDPAAAKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLRAASCGEG
       :::::::::::::::::::::::::::::: :                            
NP_001 KSSPSVKPAVDPAAAKLWTLSANDMEDDSMHLWPCRRTGKREVKGTDELPTQVSLWKLLP
              190       200       210       220       230       240

       230       240       250       260       270       280       
pF1KB8 KKRKACKNCTCGLAEELEKEKSREQMSSQPKSACGNCYLGDAFRCASCTYLGMPAFKPGE
                                                                   
NP_001 GRCLPLCQLPLPWDASLQTWGKGASE                                  
              250       260                                        




299 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:42:50 2016 done: Fri Nov  4 11:42:50 2016
 Total Scan time:  5.790 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]