FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8319, 299 aa
  1>>>pF1KB8319 299 - 299 aa - 299 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7111+/-0.000773; mu= 14.7756+/- 0.047
 mean_var=89.0114+/-17.687, 0's: 0 Z-trim(109.9): 8  B-trim: 46 in 1/51
 Lambda= 0.135941
 statistics sampled from 11197 (11201) to 11197 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.344), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS76876.1 CIAPIN1 gene_id:57019|Hs108|chr16      ( 299) 1940 390.0 1.1e-108
CCDS10781.2 CIAPIN1 gene_id:57019|Hs108|chr16      ( 312) 1606 324.5 6.2e-89
CCDS76877.1 CIAPIN1 gene_id:57019|Hs108|chr16      ( 266)  914 188.8 3.9e-48


>>CCDS76876.1 CIAPIN1 gene_id:57019|Hs108|chr16           (299 aa)
 initn: 1940 init1: 1940 opt: 1940  Z-score: 2064.4  bits: 390.0 E(32554): 1.1e-108
Smith-Waterman score: 1940; 99.0% identity (99.3% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KB8 MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQCLVPGSTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQCLVPGSTT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQRE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PLTPEEVQFVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITKKSSPSVKPAVDPA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITKKSSPSVKPAVDPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 AAKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLRAASCGEGKKRKACKNCTCGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 AAKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLRAASCGEGKKRKACKNCTCGL
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KB8 AEELEKEKSREQMSSQPKSACGNCYLGDAFRCASCTYLGMPAFKPGEKVLLSDSNLNDA
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::.::
CCDS76 AEELEKEKSREQMSSQPKSACGNCYLGDAFRCASCPYLGMPAFKPGEKVLLSDSNLHDA
              250       260       270       280       290         

>>CCDS10781.2 CIAPIN1 gene_id:57019|Hs108|chr16           (312 aa)
 initn: 1603 init1: 1603 opt: 1606  Z-score: 1710.1  bits: 324.5 E(32554): 6.2e-89
Smith-Waterman score: 1890; 94.6% identity (94.9% similar) in 312 aa overlap (1-299:1-312)

               10        20        30        40        50          
pF1KB8 MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQC-------
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
CCDS10 MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSF
               10        20        30        40        50        60

                  60        70        80        90       100       
pF1KB8 ------LVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALT
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALT
               70        80        90       100       110       120

       110       120       130       140       150       160       
pF1KB8 LSGLVEVKELQREPLTPEEVQFVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITK
       ::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::
CCDS10 LSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITK
              130       140       150       160       170       180

       170       180       190       200       210       220       
pF1KB8 KSSPSVKPAVDPAAAKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLRAASCGEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KSSPSVKPAVDPAAAKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLRAASCGEG
              190       200       210       220       230       240

       230       240       250       260       270       280       
pF1KB8 KKRKACKNCTCGLAEELEKEKSREQMSSQPKSACGNCYLGDAFRCASCTYLGMPAFKPGE
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS10 KKRKACKNCTCGLAEELEKEKSREQMSSQPKSACGNCYLGDAFRCASCPYLGMPAFKPGE
              250       260       270       280       290       300

       290         
pF1KB8 KVLLSDSNLNDA
       :::::::::.::
CCDS10 KVLLSDSNLHDA
              310  

>>CCDS76877.1 CIAPIN1 gene_id:57019|Hs108|chr16           (266 aa)
 initn: 1221 init1: 907 opt: 914  Z-score: 977.6  bits: 188.8 E(32554): 3.9e-48
Smith-Waterman score: 1198; 92.5% identity (92.5% similar) in 212 aa overlap (1-199:1-212)

               10        20        30        40        50          
pF1KB8 MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQC-------
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
CCDS76 MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSF
               10        20        30        40        50        60

                  60        70        80        90       100       
pF1KB8 ------LVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALT
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALT
               70        80        90       100       110       120

       110       120       130       140       150       160       
pF1KB8 LSGLVEVKELQREPLTPEEVQFVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITK
       ::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::
CCDS76 LSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITK
              130       140       150       160       170       180

       170       180       190       200       210       220       
pF1KB8 KSSPSVKPAVDPAAAKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLRAASCGEG
       :::::::::::::::::::::::::::::: :                            
CCDS76 KSSPSVKPAVDPAAAKLWTLSANDMEDDSMHLWPCRRTGKREVKGTDELPTQVSLWKLLP
              190       200       210       220       230       240

       230       240       250       260       270       280       
pF1KB8 KKRKACKNCTCGLAEELEKEKSREQMSSQPKSACGNCYLGDAFRCASCTYLGMPAFKPGE
                                                                   
CCDS76 GRCLPLCQLPLPWDASLQTWGKGASE                                  
              250       260                                        




299 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:42:49 2016 done: Fri Nov  4 11:42:49 2016
 Total Scan time:  1.760 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]