FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8315, 254 aa
  1>>>pF1KB8315 254 - 254 aa - 254 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3729+/-0.000715; mu= 9.8036+/- 0.043
 mean_var=87.7828+/-17.206, 0's: 0 Z-trim(111.4): 18  B-trim: 30 in 2/49
 Lambda= 0.136889
 statistics sampled from 12341 (12355) to 12341 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.38), width:  16
 Scan time:  1.540

The best scores are:                                      opt bits E(32554)
CCDS14745.1 EMD gene_id:2010|Hs108|chrX            ( 254) 1690 343.1 1.1e-94


>>CCDS14745.1 EMD gene_id:2010|Hs108|chrX                 (254 aa)
 initn: 1690 init1: 1690 opt: 1690  Z-score: 1813.2  bits: 343.1 E(32554): 1.1e-94
Smith-Waterman score: 1690; 100.0% identity (100.0% similar) in 254 aa overlap (1-254:1-254)

               10        20        30        40        50        60
pF1KB8 MDNYADLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQRRRLSPPSSSAASSYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MDNYADLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQRRRLSPPSSSAASSYS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FSDLNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTYGEPESAGPSRAVRQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FSDLNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTYGEPESAGPSRAVRQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 YYPTSSSTSFMSSSSSSSSWLTRRAIRPENRAPGAGLGQDRQVPLWGQLLLFLVFVIVLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YYPTSSSTSFMSSSSSSSSWLTRRAIRPENRAPGAGLGQDRQVPLWGQLLLFLVFVIVLF
              190       200       210       220       230       240

              250    
pF1KB8 FIYHFMQAEEGNPF
       ::::::::::::::
CCDS14 FIYHFMQAEEGNPF
              250    




254 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:40:52 2016 done: Fri Nov  4 11:40:52 2016
 Total Scan time:  1.540 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]