Result of FASTA (ccds) for
pF1KB8311
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8311, 117 aa
1>>>pF1KB8311 117 - 117 aa - 117 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0210+/-0.000734; mu= 11.0879+/- 0.044
mean_var=53.4479+/-10.635, 0's: 0 Z-trim(106.4): 11 B-trim: 0 in 0/55
Lambda= 0.175432
statistics sampled from 8958 (8968) to 8958 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.275), width: 16
Scan time: 1.150
The best scores are: opt bits E(32554)
CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16 ( 117) 776 204.0 1.8e-53
CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12 ( 117) 479 128.8 7.5e-31
CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17 ( 117) 462 124.5 1.5e-29
CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20 ( 121) 332 91.6 1.2e-19
CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20 ( 125) 314 87.1 3e-18
CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16 ( 125) 307 85.3 1e-17
CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1 ( 147) 306 85.1 1.4e-17
CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12 ( 125) 296 82.5 6.9e-17
>>CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16 (117 aa)
initn: 776 init1: 776 opt: 776 Z-score: 1073.6 bits: 204.0 E(32554): 1.8e-53
Smith-Waterman score: 776; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)
10 20 30 40 50 60
pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF
70 80 90 100 110
>>CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12 (117 aa)
initn: 514 init1: 479 opt: 479 Z-score: 667.4 bits: 128.8 E(32554): 7.5e-31
Smith-Waterman score: 479; 61.2% identity (86.2% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF
::...:::: .:.: :. ::: ::::::::::::. ... :.::::::::::.::.::
CCDS86 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF
...:::::.: : :.:.::..:.: .: ::::::: ...:: ::::::: :...:
CCDS86 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK
70 80 90 100 110
>>CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17 (117 aa)
initn: 483 init1: 462 opt: 462 Z-score: 644.1 bits: 124.5 E(32554): 1.5e-29
Smith-Waterman score: 462; 57.3% identity (88.0% similar) in 117 aa overlap (1-117:1-117)
10 20 30 40 50 60
pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF
::...::.: .:.: :. ::: ::::::::::::. ..: :.::.:::::::.::.::
CCDS11 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF
...:::::.: .: :.:.::....: .: ::::::.....:: :::.::: :...:.
CCDS11 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL
70 80 90 100 110
>>CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20 (121 aa)
initn: 328 init1: 127 opt: 332 Z-score: 466.1 bits: 91.6 E(32554): 1.2e-19
Smith-Waterman score: 332; 41.7% identity (80.9% similar) in 115 aa overlap (5-117:7-121)
10 20 30 40 50
pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSG-SQIVDIDKRKYLVPSDITV
::. .:. :: : .:: ..:...:::.:. .: .:. .:: :.:::. ...
CCDS13 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 AQFMWIIRKRIQLPSEKAIFLFVDK-TVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG
.... :::.:.:: .:.::.:.. .. . : ....::.:::::::::..:....:::
CCDS13 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
70 80 90 100 110 120
pF1KB8 F
:
CCDS13 F
>>CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20 (125 aa)
initn: 310 init1: 127 opt: 314 Z-score: 441.2 bits: 87.1 E(32554): 3e-18
Smith-Waterman score: 314; 42.5% identity (82.1% similar) in 106 aa overlap (14-117:20-125)
10 20 30 40 50
pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSG-SQIVDIDKRKYLVPS
:: : .:: ..:...:::.:. .: .:. .:: :.:::.
CCDS13 MKMRFFSSPCGKAAVDPADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 DITVAQFMWIIRKRIQLPSEKAIFLFVDK-TVPQSSLTMGQLYEKEKDEDGFLYVAYSGE
....... :::.:.:: .:.::.:.. .. . : ....::.:::::::::..:...
CCDS13 HVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQ
70 80 90 100 110 120
pF1KB8 NTFGF
.::::
CCDS13 ETFGF
>>CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16 (125 aa)
initn: 303 init1: 118 opt: 307 Z-score: 431.7 bits: 85.3 E(32554): 1e-17
Smith-Waterman score: 307; 39.5% identity (81.6% similar) in 114 aa overlap (5-116:7-120)
10 20 30 40 50
pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSG-SQIVDIDKRKYLVPSDITV
::. ...:.: . :: ..: ..:::.:. .: .:. .:: :.:::. ...
CCDS10 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 AQFMWIIRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG
.... :::.:.:: ...:.::.:. ... . : ....::.:::::::::..:....:::
CCDS10 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG
70 80 90 100 110 120
pF1KB8 F
CCDS10 MKLSV
>>CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1 (147 aa)
initn: 303 init1: 115 opt: 306 Z-score: 429.2 bits: 85.1 E(32554): 1.4e-17
Smith-Waterman score: 306; 43.0% identity (78.1% similar) in 114 aa overlap (5-116:13-126)
10 20 30 40 50
pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVD-IDKRKYLV
::. .:: : : : ::::.:...::.::. .. .:: :.::
CCDS31 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 PSDITVAQFMWIIRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYS
:...:..::. :::.:. : . .:..:.:. :.. . : ::...:. ::::::.:..:.
CCDS31 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
70 80 90 100 110 120
pF1KB8 GENTFGF
...:::
CCDS31 SQETFGCLESAAPRDGSSLEDRPCNPL
130 140
>>CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12 (125 aa)
initn: 292 init1: 118 opt: 296 Z-score: 416.6 bits: 82.5 E(32554): 6.9e-17
Smith-Waterman score: 296; 38.6% identity (80.7% similar) in 114 aa overlap (5-116:7-120)
10 20 30 40 50
pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSG-SQIVDIDKRKYLVPSDITV
::. ...:.: . :: ..: ..:::.:. .: .:. .:: :.:::. ...
CCDS41 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 AQFMWIIRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG
.... :::.:.:: ...:.::.:. ... . : ....::.:::::::::.. ....:::
CCDS41 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG
70 80 90 100 110 120
pF1KB8 F
CCDS41 MKLSV
117 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:37:42 2016 done: Fri Nov 4 11:37:42 2016
Total Scan time: 1.150 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]