FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8306, 142 aa
  1>>>pF1KB8306 142 - 142 aa - 142 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8523+/-0.000682; mu= 6.0648+/- 0.041
 mean_var=128.9356+/-25.758, 0's: 0 Z-trim(114.5): 6  B-trim: 0 in 0/53
 Lambda= 0.112950
 statistics sampled from 15028 (15034) to 15028 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.462), width:  16
 Scan time:  1.990

The best scores are:                                      opt bits E(32554)
CCDS68182.1 MAP3K7CL gene_id:56911|Hs108|chr21     ( 142)  902 156.7 4.4e-39
CCDS74775.1 MAP3K7CL gene_id:56911|Hs108|chr21     ( 136)  768 134.9 1.6e-32
CCDS13584.1 MAP3K7CL gene_id:56911|Hs108|chr21     ( 242)  760 133.7 6.1e-32
CCDS5027.1 MAP3K7 gene_id:6885|Hs108|chr6          ( 579)  453 84.0 1.4e-16
CCDS5028.1 MAP3K7 gene_id:6885|Hs108|chr6          ( 606)  453 84.0 1.4e-16


>>CCDS68182.1 MAP3K7CL gene_id:56911|Hs108|chr21          (142 aa)
 initn: 902 init1: 902 opt: 902  Z-score: 815.1  bits: 156.7 E(32554): 4.4e-39
Smith-Waterman score: 902; 97.9% identity (99.3% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KB8 MISTARVPADKPVRIAFSLNDASDDTPPEDSIPLVFPELDQQLQPLPPCHDSEESMEVFR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS68 MISTARVPADKPVRIAFSLNDASDDTPPEDSIPLVFPELDQQLQPLPPCHDSEESMEVFK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QHCQIAEEYLEVKKEITLLEQRKKELIAKLDQAEEEKVDAAELVREFEALTEENRTLRLA
       ::::::::: ::::::::::::::::::::::::.:::::::::::::::::::::::::
CCDS68 QHCQIAEEYHEVKKEITLLEQRKKELIAKLDQAEKEKVDAAELVREFEALTEENRTLRLA
               70        80        90       100       110       120

              130       140  
pF1KB8 QSQCVEQLEKLRIQYQKRQGSS
       ::::::::::::::::::::::
CCDS68 QSQCVEQLEKLRIQYQKRQGSS
              130       140  

>>CCDS74775.1 MAP3K7CL gene_id:56911|Hs108|chr21          (136 aa)
 initn: 772 init1: 760 opt: 768  Z-score: 697.4  bits: 134.9 E(32554): 1.6e-32
Smith-Waterman score: 768; 85.2% identity (90.1% similar) in 142 aa overlap (1-142:2-136)

                10        20        30        40        50         
pF1KB8  MISTARVPADKPVRIAFSLNDASDDTPPEDSIPLVFPELDQQLQPLPPCHDSEESMEVF
        ..:.. .    ::: :       ::::::::::::::::::::::::::::::::::::
CCDS74 MLVSSSSLTPFPPVRTA-------DDTPPEDSIPLVFPELDQQLQPLPPCHDSEESMEVF
               10               20        30        40        50   

      60        70        80        90       100       110         
pF1KB8 RQHCQIAEEYLEVKKEITLLEQRKKELIAKLDQAEEEKVDAAELVREFEALTEENRTLRL
       .::::::::: ::::::::::::::::::::::::.::::::::::::::::::::::::
CCDS74 KQHCQIAEEYHEVKKEITLLEQRKKELIAKLDQAEKEKVDAAELVREFEALTEENRTLRL
            60        70        80        90       100       110   

     120       130       140  
pF1KB8 AQSQCVEQLEKLRIQYQKRQGSS
       :::::::::::::::::::::::
CCDS74 AQSQCVEQLEKLRIQYQKRQGSS
           120       130      

>>CCDS13584.1 MAP3K7CL gene_id:56911|Hs108|chr21          (242 aa)
 initn: 759 init1: 759 opt: 760  Z-score: 686.9  bits: 133.7 E(32554): 6.1e-32
Smith-Waterman score: 760; 91.6% identity (93.9% similar) in 131 aa overlap (12-142:115-242)

                                  10        20        30        40 
pF1KB8                    MISTARVPADKPVRIAFSLNDASDDTPPEDSIPLVFPELDQ
                                     ::.:  :     ::::::::::::::::::
CCDS13 SLAMLEDNPKVSKLATGDWMLTLKPKSITVPVEIPSS---PLDDTPPEDSIPLVFPELDQ
           90       100       110       120          130       140 

              50        60        70        80        90       100 
pF1KB8 QLQPLPPCHDSEESMEVFRQHCQIAEEYLEVKKEITLLEQRKKELIAKLDQAEEEKVDAA
       ::::::::::::::::::.::::::::: ::::::::::::::::::::::::.::::::
CCDS13 QLQPLPPCHDSEESMEVFKQHCQIAEEYHEVKKEITLLEQRKKELIAKLDQAEKEKVDAA
             150       160       170       180       190       200 

             110       120       130       140  
pF1KB8 ELVREFEALTEENRTLRLAQSQCVEQLEKLRIQYQKRQGSS
       :::::::::::::::::::::::::::::::::::::::::
CCDS13 ELVREFEALTEENRTLRLAQSQCVEQLEKLRIQYQKRQGSS
             210       220       230       240  

>>CCDS5027.1 MAP3K7 gene_id:6885|Hs108|chr6               (579 aa)
 initn: 450 init1: 410 opt: 453  Z-score: 411.2  bits: 84.0 E(32554): 1.4e-16
Smith-Waterman score: 453; 46.9% identity (79.0% similar) in 143 aa overlap (1-142:437-579)

                                             10         20         
pF1KB8                               MISTARVPADKPVRI-AFSLNDASDDTPPE
                                     ::.:.   ..::.:   .. .:..: .  .
CCDS50 QPRRRSIQDLTVTGTEPGQVSSRSSSPSVRMITTSGPTSEKPTRSHPWTPDDSTDTNGSD
        410       420       430       440       450       460      

      30        40        50        60        70        80         
pF1KB8 DSIPLVFPELDQQLQPLPPCHDSEESMEVFRQHCQIAEEYLEVKKEITLLEQRKKELIAK
       .:::...  ::.::::: :: .:.::: ::.:::..:.::..:. ::.:: :::.::.:.
CCDS50 NSIPMAYLTLDHQLQPLAPCPNSKESMAVFEQHCKMAQEYMKVQTEIALLLQRKQELVAE
        470       480       490       500       510       520      

      90       100       110       120       130       140  
pF1KB8 LDQAEEEKVDAAELVREFEALTEENRTLRLAQSQCVEQLEKLRIQYQKRQGSS
       ::: :... ....::.: . : .::..:    .:: .::: .: : :::::.:
CCDS50 LDQDEKDQQNTSRLVQEHKKLLDENKSLSTYYQQCKKQLEVIRSQQQKRQGTS
        530       540       550       560       570         

>>CCDS5028.1 MAP3K7 gene_id:6885|Hs108|chr6               (606 aa)
 initn: 450 init1: 410 opt: 453  Z-score: 411.0  bits: 84.0 E(32554): 1.4e-16
Smith-Waterman score: 453; 46.9% identity (79.0% similar) in 143 aa overlap (1-142:464-606)

                                             10         20         
pF1KB8                               MISTARVPADKPVRI-AFSLNDASDDTPPE
                                     ::.:.   ..::.:   .. .:..: .  .
CCDS50 QPRRRSIQDLTVTGTEPGQVSSRSSSPSVRMITTSGPTSEKPTRSHPWTPDDSTDTNGSD
           440       450       460       470       480       490   

      30        40        50        60        70        80         
pF1KB8 DSIPLVFPELDQQLQPLPPCHDSEESMEVFRQHCQIAEEYLEVKKEITLLEQRKKELIAK
       .:::...  ::.::::: :: .:.::: ::.:::..:.::..:. ::.:: :::.::.:.
CCDS50 NSIPMAYLTLDHQLQPLAPCPNSKESMAVFEQHCKMAQEYMKVQTEIALLLQRKQELVAE
           500       510       520       530       540       550   

      90       100       110       120       130       140  
pF1KB8 LDQAEEEKVDAAELVREFEALTEENRTLRLAQSQCVEQLEKLRIQYQKRQGSS
       ::: :... ....::.: . : .::..:    .:: .::: .: : :::::.:
CCDS50 LDQDEKDQQNTSRLVQEHKKLLDENKSLSTYYQQCKKQLEVIRSQQQKRQGTS
           560       570       580       590       600      




142 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:35:35 2016 done: Fri Nov  4 11:35:36 2016
 Total Scan time:  1.990 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]