Result of FASTA (ccds) for
pF1KB8301
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8301, 478 aa
1>>>pF1KB8301 478 - 478 aa - 478 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7765+/-0.000825; mu= 15.2989+/- 0.050
mean_var=73.0682+/-14.305, 0's: 0 Z-trim(107.9): 10 B-trim: 12 in 1/50
Lambda= 0.150041
statistics sampled from 9868 (9874) to 9868 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.303), width: 16
Scan time: 3.090
The best scores are: opt bits E(32554)
CCDS77678.1 MIEF1 gene_id:54471|Hs108|chr22 ( 478) 3188 699.4 2.1e-201
CCDS13995.1 MIEF1 gene_id:54471|Hs108|chr22 ( 463) 2866 629.7 2e-180
CCDS11193.1 MIEF2 gene_id:125170|Hs108|chr17 ( 454) 925 209.5 5.9e-54
CCDS45624.1 MIEF2 gene_id:125170|Hs108|chr17 ( 465) 925 209.6 6e-54
CCDS45625.1 MIEF2 gene_id:125170|Hs108|chr17 ( 205) 263 66.1 4e-11
>>CCDS77678.1 MIEF1 gene_id:54471|Hs108|chr22 (478 aa)
initn: 3188 init1: 3188 opt: 3188 Z-score: 3729.2 bits: 699.4 E(32554): 2.1e-201
Smith-Waterman score: 3188; 99.6% identity (100.0% similar) in 478 aa overlap (1-478:1-478)
10 20 30 40 50 60
pF1KB8 MAGAGERKGKKDDNGIGTAIDFVLSNARLVLGVGGAAMLGIATLAVKRMYDRAISAPTSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MAGAGERKGKKDDNGIGTAIDFVLSNARLVLGVGGAAMLGIATLAVKRMYDRAISAPTSP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TRLSHSGKRSWEEPNWMGSPRLLNRDMKTGLSRSLQTLPTDSSTFDTDTFCPPRPKPVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 TRLSHSGKRSWEEPNWMGSPRLLNRDMKTGLSRSLQTLPTDSSTFDTDTFCPPRPKPVAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KGQVDLKKSRLRMSLQEKLLTYYRNRAAIPAGEQARAKQAAVDICAELRSFLRAKLPDMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KGQVDLKKSRLRMSLQEKLLTYYRNRAAIPAGEQARAKQAAVDICAELRSFLRAKLPDMP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LRDMYLSGSLYDDLQVVTADHIQLIVPLVLEQNLWSCIPGEDTIMNVPGFFLVRRENPEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LRDMYLSGSLYDDLQVVTADHIQLIVPLVLEQNLWSCIPGEDTIMNVPGFFLVRRENPEY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 FPRGSSYWDRCVVGGYLSPKTVANTFEKVVAGSINWPAIGSLLDYVIRPAPPPEALTLEV
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS77 FPRGSSYWDRCVVGGYLSPKTVADTFEKVVAGSINWPAIGSLLDYVIRPAPPPEALTLEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 QYERDKHLFIDFLPSVTLGDTVLVAKPHRLAQYDNLWRLSLRPAETARLRALDQADSGCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QYERDKHLFIDFLPSVTLGDTVLVAKPHRLAQYDNLWRLSLRPAETARLRALDQADSGCR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 SLCLKILKAICKSTPALGHLTASQLTNVILHLAQEEADWSPDMLADRFLQALRGLISYLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 SLCLKILKAICKSTPALGHLTASQLTNVILHLAQEEADWSPDMLADRFLQALRGLISYLE
370 380 390 400 410 420
430 440 450 460 470
pF1KB8 AGVLPSALNPKDKALKERSLRYQVRMMEVDSRLNVSWKIQSLVGVWWPCFLPRQALLF
:::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS77 AGVLPSALNPKDKALKERSLRHQVRMMEVDSRLNVSWKIQSLVGVWWPCFLPRQALLF
430 440 450 460 470
>>CCDS13995.1 MIEF1 gene_id:54471|Hs108|chr22 (463 aa)
initn: 2866 init1: 2866 opt: 2866 Z-score: 3352.8 bits: 629.7 E(32554): 2e-180
Smith-Waterman score: 2866; 99.8% identity (100.0% similar) in 431 aa overlap (1-431:1-431)
10 20 30 40 50 60
pF1KB8 MAGAGERKGKKDDNGIGTAIDFVLSNARLVLGVGGAAMLGIATLAVKRMYDRAISAPTSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAGAGERKGKKDDNGIGTAIDFVLSNARLVLGVGGAAMLGIATLAVKRMYDRAISAPTSP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TRLSHSGKRSWEEPNWMGSPRLLNRDMKTGLSRSLQTLPTDSSTFDTDTFCPPRPKPVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TRLSHSGKRSWEEPNWMGSPRLLNRDMKTGLSRSLQTLPTDSSTFDTDTFCPPRPKPVAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KGQVDLKKSRLRMSLQEKLLTYYRNRAAIPAGEQARAKQAAVDICAELRSFLRAKLPDMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KGQVDLKKSRLRMSLQEKLLTYYRNRAAIPAGEQARAKQAAVDICAELRSFLRAKLPDMP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LRDMYLSGSLYDDLQVVTADHIQLIVPLVLEQNLWSCIPGEDTIMNVPGFFLVRRENPEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LRDMYLSGSLYDDLQVVTADHIQLIVPLVLEQNLWSCIPGEDTIMNVPGFFLVRRENPEY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 FPRGSSYWDRCVVGGYLSPKTVANTFEKVVAGSINWPAIGSLLDYVIRPAPPPEALTLEV
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS13 FPRGSSYWDRCVVGGYLSPKTVADTFEKVVAGSINWPAIGSLLDYVIRPAPPPEALTLEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 QYERDKHLFIDFLPSVTLGDTVLVAKPHRLAQYDNLWRLSLRPAETARLRALDQADSGCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QYERDKHLFIDFLPSVTLGDTVLVAKPHRLAQYDNLWRLSLRPAETARLRALDQADSGCR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 SLCLKILKAICKSTPALGHLTASQLTNVILHLAQEEADWSPDMLADRFLQALRGLISYLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SLCLKILKAICKSTPALGHLTASQLTNVILHLAQEEADWSPDMLADRFLQALRGLISYLE
370 380 390 400 410 420
430 440 450 460 470
pF1KB8 AGVLPSALNPKDKALKERSLRYQVRMMEVDSRLNVSWKIQSLVGVWWPCFLPRQALLF
:::::::::::
CCDS13 AGVLPSALNPKVNLFAELTPEEIDELGYTLYCSLSEPEVLLQT
430 440 450 460
>>CCDS11193.1 MIEF2 gene_id:125170|Hs108|chr17 (454 aa)
initn: 1090 init1: 585 opt: 925 Z-score: 1082.2 bits: 209.5 E(32554): 5.9e-54
Smith-Waterman score: 1115; 45.2% identity (71.6% similar) in 436 aa overlap (1-430:1-423)
10 20 30 40 50
pF1KB8 MAGAGERKGKK-DDNGIGTAIDFVLSNARLVLGVGGAAMLGIATLAVKRMYDRAISAPTS
:: ....::. .:.:.:. .::.:.::::::::::::.::::::::::. ::: ::
CCDS11 MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRA----TS
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 PTRLSHSGKRSWEEPNWM-GSPRLLNRDMKTGLSRSLQTLPTDSSTFDTDTFCPPRPKPV
: . . ::.: . . ..:.: : ..::. . : .::. . . :. :
CCDS11 PRDEDDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDPEVTP-
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 ARKGQVDLKKSRLRMSLQEKLLTYYRNRAAIPAGEQARAKQAAVDICAELRSFLRAKLPD
:.. . . : ..:::.::.. :.:..:::.. : ::: : :: ::....:.:.:.
CCDS11 ----QLS-SPAPLCLTLQERLLAFERDRVTIPAAQVALAKQLAGDIALELQAYFRSKFPE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 MPLRDMYLSGSLYDDLQVVTADHIQLIVPLVLEQNLWSCIPGEDTIMNVPGFFLVRRENP
.:. . .: ::: ::. .:::..:.:::::: .::: .:: ::. : . ::: .
CCDS11 LPFGAFVPGGPLYDGLQAGAADHVRLLVPLVLEPGLWSLVPGVDTVARDPRCWAVRRTQL
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 EYFPRGSSYWDRCVVGGYLSPKTVANTFEKVVAGSINWPAIGSLLDYVIRPAPPPEALTL
:. ::::: ::: .:::::: ... . ..:..:.:.::::::::: .:::. : : :
CCDS11 EFCPRGSSPWDRFLVGGYLSSRVLLELLRKALAASVNWPAIGSLLGCLIRPSMASEELLL
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 EVQYERDKHLFIDFL---PSVTLGDTVLVAKPHR-LAQYDNLWRLSLRPAETARLRALDQ
:::.:: . : . : :.: : .:.: : . :: ::: .: :.:.:::::::.
CCDS11 EVQHERLE-LTVAVLVAVPGVDADDRLLLAWPLEGLA--GNLWLQDLYPVEAARLRALDD
300 310 320 330 340
360 370 380 390 400 410
pF1KB8 ADSGCRSLCLKILKAICKSTPALGHLTASQLTNVILHLAQEEADWSPDMLADRFLQALRG
:.: : : .: :.:.. :::.: ..::.:.:.:.....::. . :..::::::.
CCDS11 HDAGTRRRLLLLLCAVCRGCSALGQLGRGHLTQVVLRLGEDNVDWTEEALGERFLQALEL
350 360 370 380 390 400
420 430 440 450 460 470
pF1KB8 LISYLEAGVLPSALNPKDKALKERSLRYQVRMMEVDSRLNVSWKIQSLVGVWWPCFLPRQ
::. :: . :: .::
CCDS11 LIGSLEQASLPCHFNPSVNLFSSLREEEIDDIGYALYSGLQEPEGLL
410 420 430 440 450
>>CCDS45624.1 MIEF2 gene_id:125170|Hs108|chr17 (465 aa)
initn: 1090 init1: 585 opt: 925 Z-score: 1082.0 bits: 209.6 E(32554): 6e-54
Smith-Waterman score: 1115; 45.2% identity (71.6% similar) in 436 aa overlap (1-430:12-434)
10 20 30 40
pF1KB8 MAGAGERKGKK-DDNGIGTAIDFVLSNARLVLGVGGAAMLGIATLAVKR
:: ....::. .:.:.:. .::.:.::::::::::::.::::::::::
CCDS45 MGLSPNLDRQTMAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKR
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 MYDRAISAPTSPTRLSHSGKRSWEEPNWM-GSPRLLNRDMKTGLSRSLQTLPTDSSTFDT
. ::: ::: . . ::.: . . ..:.: : ..::. . : .::. .
CCDS45 FIDRA----TSPRDEDDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPEG
70 80 90 100 110
110 120 130 140 150 160
pF1KB8 DTFCPPRPKPVARKGQVDLKKSRLRMSLQEKLLTYYRNRAAIPAGEQARAKQAAVDICAE
. :. : :.. . . : ..:::.::.. :.:..:::.. : ::: : :: :
CCDS45 PAETDPEVTP-----QLS-SPAPLCLTLQERLLAFERDRVTIPAAQVALAKQLAGDIALE
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 LRSFLRAKLPDMPLRDMYLSGSLYDDLQVVTADHIQLIVPLVLEQNLWSCIPGEDTIMNV
:....:.:.:..:. . .: ::: ::. .:::..:.:::::: .::: .:: ::.
CCDS45 LQAYFRSKFPELPFGAFVPGGPLYDGLQAGAADHVRLLVPLVLEPGLWSLVPGVDTVARD
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 PGFFLVRRENPEYFPRGSSYWDRCVVGGYLSPKTVANTFEKVVAGSINWPAIGSLLDYVI
: . ::: . :. ::::: ::: .:::::: ... . ..:..:.:.::::::::: .:
CCDS45 PRCWAVRRTQLEFCPRGSSPWDRFLVGGYLSSRVLLELLRKALAASVNWPAIGSLLGCLI
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 RPAPPPEALTLEVQYERDKHLFIDFL---PSVTLGDTVLVAKPHR-LAQYDNLWRLSLRP
::. : : ::::.:: . : . : :.: : .:.: : . :: ::: .: :
CCDS45 RPSMASEELLLEVQHERLE-LTVAVLVAVPGVDADDRLLLAWPLEGLA--GNLWLQDLYP
300 310 320 330 340
350 360 370 380 390 400
pF1KB8 AETARLRALDQADSGCRSLCLKILKAICKSTPALGHLTASQLTNVILHLAQEEADWSPDM
.:.:::::::. :.: : : .: :.:.. :::.: ..::.:.:.:.....::. .
CCDS45 VEAARLRALDDHDAGTRRRLLLLLCAVCRGCSALGQLGRGHLTQVVLRLGEDNVDWTEEA
350 360 370 380 390 400
410 420 430 440 450 460
pF1KB8 LADRFLQALRGLISYLEAGVLPSALNPKDKALKERSLRYQVRMMEVDSRLNVSWKIQSLV
:..::::::. ::. :: . :: .::
CCDS45 LGERFLQALELLIGSLEQASLPCHFNPSVNLFSSLREEEIDDIGYALYSGLQEPEGLL
410 420 430 440 450 460
>>CCDS45625.1 MIEF2 gene_id:125170|Hs108|chr17 (205 aa)
initn: 273 init1: 217 opt: 263 Z-score: 313.1 bits: 66.1 E(32554): 4e-11
Smith-Waterman score: 263; 46.7% identity (72.4% similar) in 105 aa overlap (1-103:1-101)
10 20 30 40 50
pF1KB8 MAGAGERKGKK-DDNGIGTAIDFVLSNARLVLGVGGAAMLGIATLAVKRMYDRAISAPTS
:: ....::. .:.:.:. .::.:.::::::::::::.::::::::::. ::: ::
CCDS45 MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRA----TS
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 PTRLSHSGKRSWEEPNWM-GSPRLLNRDMKTGLSRSLQTLPTDSSTFDTDTFCPPRPKPV
: . . ::.: . . ..:.: : ..::. . : .::
CCDS45 PRDEDDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPGEAAGLRAGPCDH
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 ARKGQVDLKKSRLRMSLQEKLLTYYRNRAAIPAGEQARAKQAAVDICAELRSFLRAKLPD
CCDS45 PSSPGGFGQTAGWRHRPGAAGLLSEQVPGTALWGIRAWGAALRRAAGGGCGPCASPGATG
120 130 140 150 160 170
478 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:32:02 2016 done: Fri Nov 4 11:32:03 2016
Total Scan time: 3.090 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]