Result of FASTA (omim) for
pF1KB8300
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8300, 463 aa
1>>>pF1KB8300 463 - 463 aa - 463 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0770+/-0.00052; mu= 14.2330+/- 0.032
mean_var=84.7631+/-16.815, 0's: 0 Z-trim(108.5): 73 B-trim: 56 in 1/50
Lambda= 0.139306
statistics sampled from 16494 (16549) to 16494 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.54), E-opt: 0.2 (0.194), width: 16
Scan time: 7.390
The best scores are: opt bits E(85289)
NP_006657 (OMIM: 604788) ruvB-like 2 isoform 1 [Ho ( 463) 2907 594.8 1.6e-169
NP_001308119 (OMIM: 604788) ruvB-like 2 isoform 2 ( 429) 2653 543.7 3.6e-154
XP_011524632 (OMIM: 604788) PREDICTED: ruvB-like 2 ( 418) 2621 537.3 3e-152
NP_001308120 (OMIM: 604788) ruvB-like 2 isoform 3 ( 418) 2621 537.3 3e-152
XP_011511551 (OMIM: 603449) PREDICTED: ruvB-like 1 ( 375) 747 160.6 6.5e-39
NP_001306013 (OMIM: 603449) ruvB-like 1 isoform 2 ( 386) 747 160.6 6.7e-39
XP_011511550 (OMIM: 603449) PREDICTED: ruvB-like 1 ( 393) 747 160.6 6.8e-39
NP_003698 (OMIM: 603449) ruvB-like 1 isoform 1 [Ho ( 456) 747 160.7 7.7e-39
XP_016862845 (OMIM: 603449) PREDICTED: ruvB-like 1 ( 467) 747 160.7 7.9e-39
NP_001306015 (OMIM: 603449) ruvB-like 1 isoform 3 ( 315) 545 120.0 9.4e-27
XP_005247898 (OMIM: 603449) PREDICTED: ruvB-like 1 ( 396) 545 120.0 1.1e-26
XP_016862846 (OMIM: 603449) PREDICTED: ruvB-like 1 ( 407) 545 120.1 1.2e-26
>>NP_006657 (OMIM: 604788) ruvB-like 2 isoform 1 [Homo s (463 aa)
initn: 2907 init1: 2907 opt: 2907 Z-score: 3164.3 bits: 594.8 E(85289): 1.6e-169
Smith-Waterman score: 2907; 100.0% identity (100.0% similar) in 463 aa overlap (1-463:1-463)
10 20 30 40 50 60
pF1KB8 MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 QAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 SLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 TVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 VHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTE
370 380 390 400 410 420
430 440 450 460
pF1KB8 VQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS
:::::::::::::::::::::::::::::::::::::::::::
NP_006 VQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS
430 440 450 460
>>NP_001308119 (OMIM: 604788) ruvB-like 2 isoform 2 [Hom (429 aa)
initn: 2653 init1: 2653 opt: 2653 Z-score: 2888.9 bits: 543.7 E(85289): 3.6e-154
Smith-Waterman score: 2653; 100.0% identity (100.0% similar) in 423 aa overlap (41-463:7-429)
20 30 40 50 60 70
pF1KB8 PEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAG
::::::::::::::::::::::::::::::
NP_001 MCASHPQASQGMVGQLAARRAAGVVLEMIREGKIAG
10 20 30
80 90 100 110 120 130
pF1KB8 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVR
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB8 IKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAG
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB8 DVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVI
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB8 NSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFS
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB8 FLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQI
280 290 300 310 320 330
380 390 400 410 420 430
pF1KB8 LRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVY
340 350 360 370 380 390
440 450 460
pF1KB8 SLFLDESRSTQYMKEYQDAFLFNELKGETMDTS
:::::::::::::::::::::::::::::::::
NP_001 SLFLDESRSTQYMKEYQDAFLFNELKGETMDTS
400 410 420
>>XP_011524632 (OMIM: 604788) PREDICTED: ruvB-like 2 iso (418 aa)
initn: 2621 init1: 2621 opt: 2621 Z-score: 2854.3 bits: 537.3 E(85289): 3e-152
Smith-Waterman score: 2621; 100.0% identity (100.0% similar) in 418 aa overlap (46-463:1-418)
20 30 40 50 60 70
pF1KB8 VTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLI
::::::::::::::::::::::::::::::
XP_011 MVGQLAARRAAGVVLEMIREGKIAGRAVLI
10 20 30
80 90 100 110 120 130
pF1KB8 AGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEET
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB8 EIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITI
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB8 DKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQ
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB8 GFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRA
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB8 LESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRC
280 290 300 310 320 330
380 390 400 410 420 430
pF1KB8 EEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLD
340 350 360 370 380 390
440 450 460
pF1KB8 ESRSTQYMKEYQDAFLFNELKGETMDTS
::::::::::::::::::::::::::::
XP_011 ESRSTQYMKEYQDAFLFNELKGETMDTS
400 410
>>NP_001308120 (OMIM: 604788) ruvB-like 2 isoform 3 [Hom (418 aa)
initn: 2621 init1: 2621 opt: 2621 Z-score: 2854.3 bits: 537.3 E(85289): 3e-152
Smith-Waterman score: 2621; 100.0% identity (100.0% similar) in 418 aa overlap (46-463:1-418)
20 30 40 50 60 70
pF1KB8 VTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLI
::::::::::::::::::::::::::::::
NP_001 MVGQLAARRAAGVVLEMIREGKIAGRAVLI
10 20 30
80 90 100 110 120 130
pF1KB8 AGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEET
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB8 EIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITI
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB8 DKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQ
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB8 GFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRA
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB8 LESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRC
280 290 300 310 320 330
380 390 400 410 420 430
pF1KB8 EEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLD
340 350 360 370 380 390
440 450 460
pF1KB8 ESRSTQYMKEYQDAFLFNELKGETMDTS
::::::::::::::::::::::::::::
NP_001 ESRSTQYMKEYQDAFLFNELKGETMDTS
400 410
>>XP_011511551 (OMIM: 603449) PREDICTED: ruvB-like 1 iso (375 aa)
initn: 1059 init1: 483 opt: 747 Z-score: 819.6 bits: 160.6 E(85289): 6.5e-39
Smith-Waterman score: 1097; 45.6% identity (74.9% similar) in 375 aa overlap (9-370:2-374)
10 20 30 40 50 60
pF1KB8 MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL
:. :....:. .::..:::..:::::.. .::..:.::: ::.: ::..
XP_011 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT
:.:. :.::::::.:: :::::::.:...:: :: .:: ..:::..: :..:::.:
XP_011 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLM
60 70 80 90 100 110
130 140 150 160 170
pF1KB8 QAFRRSIGVRIKEETEIIEGEVVEI---QIDRPATGTGSKVGKLT--LKTTEMETIYDLG
. :::.::.:::: :. ::::.:. . . : : :. .... :::.. :
XP_011 ENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLD
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 TKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKR
...::: :..:.::::: :. .: ... :: : : ..: . . .: : :...:.
XP_011 PSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEE--YVPLPKGDVHKK
180 190 200 210 220 230
240 250 260 270 280
pF1KB8 KEVVHTVSLHEIDVINSRTQGFLALFS--GDT-----GEIKSEVREQINAKVAEWREEGK
::... :.::..:: :.: :: ..: :. :: ...: .:: : .. ..:
XP_011 KEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGI
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 AEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGT-SYQSPHGIP
::..:::::.::::::::: :..:.:::::..::..:.:.::: :::: . ::::::
XP_011 AELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIP
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB8 IDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLIT
.:::::..:. : :. .. ::.
XP_011 LDLLDRVMIIRTMLYTPQEMKQVP
360 370
>>NP_001306013 (OMIM: 603449) ruvB-like 1 isoform 2 [Hom (386 aa)
initn: 1064 init1: 483 opt: 747 Z-score: 819.4 bits: 160.6 E(85289): 6.7e-39
Smith-Waterman score: 1102; 45.7% identity (75.0% similar) in 376 aa overlap (9-371:2-375)
10 20 30 40 50 60
pF1KB8 MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL
:. :....:. .::..:::..:::::.. .::..:.::: ::.: ::..
NP_001 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT
:.:. :.::::::.:: :::::::.:...:: :: .:: ..:::..: :..:::.:
NP_001 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLM
60 70 80 90 100 110
130 140 150 160 170
pF1KB8 QAFRRSIGVRIKEETEIIEGEVVEI---QIDRPATGTGSKVGKLT--LKTTEMETIYDLG
. :::.::.:::: :. ::::.:. . . : : :. .... :::.. :
NP_001 ENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLD
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 TKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKR
...::: :..:.::::: :. .: ... :: : : ..: . . .: : :...:.
NP_001 PSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEE--YVPLPKGDVHKK
180 190 200 210 220 230
240 250 260 270 280
pF1KB8 KEVVHTVSLHEIDVINSRTQGFLALFS--GDT-----GEIKSEVREQINAKVAEWREEGK
::... :.::..:: :.: :: ..: :. :: ...: .:: : .. ..:
NP_001 KEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGI
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 AEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGT-SYQSPHGIP
::..:::::.::::::::: :..:.:::::..::..:.:.::: :::: . ::::::
NP_001 AELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIP
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB8 IDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLIT
.:::::..:. : :. .. ::.:
NP_001 LDLLDRVMIIRTMLYTPQEMKQVLSAAADPGQLAC
360 370 380
>>XP_011511550 (OMIM: 603449) PREDICTED: ruvB-like 1 iso (393 aa)
initn: 967 init1: 514 opt: 747 Z-score: 819.3 bits: 160.6 E(85289): 6.8e-39
Smith-Waterman score: 974; 45.0% identity (74.7% similar) in 340 aa overlap (9-336:2-339)
10 20 30 40 50 60
pF1KB8 MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL
:. :....:. .::..:::..:::::.. .::..:.::: ::.: ::..
XP_011 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT
:.:. :.::::::.:: :::::::.:...:: :: .:: ..:::..: :..:::.:
XP_011 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLM
60 70 80 90 100 110
130 140 150 160 170
pF1KB8 QAFRRSIGVRIKEETEIIEGEVVEI---QIDRPATGTGSKVGKLT--LKTTEMETIYDLG
. :::.::.:::: :. ::::.:. . . : : :. .... :::.. :
XP_011 ENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLD
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 TKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKR
...::: :..:.::::: :. .: ... :: : : ..: . . .: : :...:.
XP_011 PSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEE--YVPLPKGDVHKK
180 190 200 210 220 230
240 250 260 270 280
pF1KB8 KEVVHTVSLHEIDVINSRTQGFLALFS--GDT-----GEIKSEVREQINAKVAEWREEGK
::... :.::..:: :.: :: ..: :. :: ...: .:: : .. ..:
XP_011 KEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGI
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 AEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPI
::..:::::.::::::::: :..:.:::::..::..:.:.::: ::
XP_011 AELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRYAVLDSKEIWVC
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB8 DLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITA
XP_011 GFIAPNCLSGGSSLMAEFGQLLNEALRTSHPLTASLLTFWTE
360 370 380 390
>>NP_003698 (OMIM: 603449) ruvB-like 1 isoform 1 [Homo s (456 aa)
initn: 1229 init1: 483 opt: 747 Z-score: 818.3 bits: 160.7 E(85289): 7.7e-39
Smith-Waterman score: 1267; 43.0% identity (73.7% similar) in 456 aa overlap (9-451:2-455)
10 20 30 40 50 60
pF1KB8 MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL
:. :....:. .::..:::..:::::.. .::..:.::: ::.: ::..
NP_003 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT
:.:. :.::::::.:: :::::::.:...:: :: .:: ..:::..: :..:::.:
NP_003 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLM
60 70 80 90 100 110
130 140 150 160 170
pF1KB8 QAFRRSIGVRIKEETEIIEGEVVEI---QIDRPATGTGSKVGKLT--LKTTEMETIYDLG
. :::.::.:::: :. ::::.:. . . : : :. .... :::.. :
NP_003 ENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLD
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 TKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKR
...::: :..:.::::: :. .: ... :: : : ..: . . .: : :...:.
NP_003 PSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEE--YVPLPKGDVHKK
180 190 200 210 220 230
240 250 260 270 280
pF1KB8 KEVVHTVSLHEIDVINSRTQGFLALFS--GDT-----GEIKSEVREQINAKVAEWREEGK
::... :.::..:: :.: :: ..: :. :: ...: .:: : .. ..:
NP_003 KEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGI
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 AEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGT-SYQSPHGIP
::..:::::.::::::::: :..:.:::::..::..:.:.::: :::: . ::::::
NP_003 AELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIP
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB8 IDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLIT
.:::::..:. : :. .. :::..:: . : ...::.: . : .:: .:.:::..::.:
NP_003 LDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLT
360 370 380 390 400 410
410 420 430 440 450 460
pF1KB8 AASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS
:.:. . .. . .... :: : . :.. . . :: ..
NP_003 PANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDKYMK
420 430 440 450
>>XP_016862845 (OMIM: 603449) PREDICTED: ruvB-like 1 iso (467 aa)
initn: 1167 init1: 514 opt: 747 Z-score: 818.1 bits: 160.7 E(85289): 7.9e-39
Smith-Waterman score: 1174; 45.4% identity (75.1% similar) in 405 aa overlap (9-400:2-404)
10 20 30 40 50 60
pF1KB8 MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL
:. :....:. .::..:::..:::::.. .::..:.::: ::.: ::..
XP_016 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT
:.:. :.::::::.:: :::::::.:...:: :: .:: ..:::..: :..:::.:
XP_016 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLM
60 70 80 90 100 110
130 140 150 160 170
pF1KB8 QAFRRSIGVRIKEETEIIEGEVVEI---QIDRPATGTGSKVGKLT--LKTTEMETIYDLG
. :::.::.:::: :. ::::.:. . . : : :. .... :::.. :
XP_016 ENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLD
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 TKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKR
...::: :..:.::::: :. .: ... :: : : ..: . . .: : :...:.
XP_016 PSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEE--YVPLPKGDVHKK
180 190 200 210 220 230
240 250 260 270 280
pF1KB8 KEVVHTVSLHEIDVINSRTQGFLALFS--GDT-----GEIKSEVREQINAKVAEWREEGK
::... :.::..:: :.: :: ..: :. :: ...: .:: : .. ..:
XP_016 KEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGI
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 AEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGT-SYQSPHGIP
::..:::::.::::::::: :..:.:::::..::..:.:.::: :::: . ::::::
XP_016 AELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIP
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB8 IDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLIT
.:::::..:. : :. .. :::..:: . : ...::.: . : .:: .:.::
XP_016 LDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRSHDSMNM
360 370 380 390 400 410
410 420 430 440 450 460
pF1KB8 AASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS
XP_016 LVQLIWKPAAFKYHLIVSTQYDDSAPHRVGDCTQGILKLKSRPWKLPGVGSGHTWK
420 430 440 450 460
>>NP_001306015 (OMIM: 603449) ruvB-like 1 isoform 3 [Hom (315 aa)
initn: 886 init1: 310 opt: 545 Z-score: 601.3 bits: 120.0 E(85289): 9.4e-27
Smith-Waterman score: 895; 45.6% identity (73.4% similar) in 316 aa overlap (68-370:1-314)
40 50 60 70 80 90
pF1KB8 EPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD
.::::::.:: :::::::.:...:: ::
NP_001 MAGRAVLLAGPPGTGKTALALAIAQELGSK
10 20 30
100 110 120 130 140 150
pF1KB8 TPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEI---QIDRPATGT
.:: ..:::..: :..:::.: . :::.::.:::: :. ::::.:. . . : :
NP_001 VPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGY
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 GSKVGKLT--LKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRA
:. .... :::.. : ...::: :..:.::::: :. .: ... :: : :
NP_001 GKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYA
100 110 120 130 140 150
220 230 240 250 260
pF1KB8 RDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFS--GDT-----
..: . . .: : :...:.::... :.::..:: :.: :: ..: :.
NP_001 TEFDLEAEE--YVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKK
160 170 180 190 200
270 280 290 300 310 320
pF1KB8 GEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLI
:: ...: .:: : .. ..: ::..:::::.::::::::: :..:.:::::..::..:
NP_001 TEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVI
210 220 230 240 250 260
330 340 350 360 370 380
pF1KB8 MATNRGITRIRGT-SYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSE
.:.::: :::: . ::::::.:::::..:. : :. .. ::.
NP_001 FASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQVP
270 280 290 300 310
390 400 410 420 430 440
pF1KB8 DAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMK
463 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:30:13 2016 done: Fri Nov 4 11:30:15 2016
Total Scan time: 7.390 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]