Result of FASTA (ccds) for
pF1KB8300
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8300, 463 aa
1>>>pF1KB8300 463 - 463 aa - 463 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2410+/-0.00121; mu= 12.9476+/- 0.072
mean_var=75.0978+/-14.856, 0's: 0 Z-trim(101.3): 47 B-trim: 0 in 0/50
Lambda= 0.148000
statistics sampled from 6452 (6472) to 6452 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.549), E-opt: 0.2 (0.199), width: 16
Scan time: 1.940
The best scores are: opt bits E(32554)
CCDS42588.1 RUVBL2 gene_id:10856|Hs108|chr19 ( 463) 2907 630.6 1e-180
CCDS3047.1 RUVBL1 gene_id:8607|Hs108|chr3 ( 456) 747 169.4 6.8e-42
CCDS82833.1 RUVBL1 gene_id:8607|Hs108|chr3 ( 315) 545 126.3 4.7e-29
>>CCDS42588.1 RUVBL2 gene_id:10856|Hs108|chr19 (463 aa)
initn: 2907 init1: 2907 opt: 2907 Z-score: 3358.0 bits: 630.6 E(32554): 1e-180
Smith-Waterman score: 2907; 100.0% identity (100.0% similar) in 463 aa overlap (1-463:1-463)
10 20 30 40 50 60
pF1KB8 MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 QAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 SLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 TVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 VHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTE
370 380 390 400 410 420
430 440 450 460
pF1KB8 VQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS
:::::::::::::::::::::::::::::::::::::::::::
CCDS42 VQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS
430 440 450 460
>>CCDS3047.1 RUVBL1 gene_id:8607|Hs108|chr3 (456 aa)
initn: 1229 init1: 483 opt: 747 Z-score: 865.6 bits: 169.4 E(32554): 6.8e-42
Smith-Waterman score: 1267; 43.0% identity (73.7% similar) in 456 aa overlap (9-451:2-455)
10 20 30 40 50 60
pF1KB8 MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL
:. :....:. .::..:::..:::::.. .::..:.::: ::.: ::..
CCDS30 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT
:.:. :.::::::.:: :::::::.:...:: :: .:: ..:::..: :..:::.:
CCDS30 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLM
60 70 80 90 100 110
130 140 150 160 170
pF1KB8 QAFRRSIGVRIKEETEIIEGEVVEI---QIDRPATGTGSKVGKLT--LKTTEMETIYDLG
. :::.::.:::: :. ::::.:. . . : : :. .... :::.. :
CCDS30 ENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLD
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 TKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKR
...::: :..:.::::: :. .: ... :: : : ..: . . .: : :...:.
CCDS30 PSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEE--YVPLPKGDVHKK
180 190 200 210 220 230
240 250 260 270 280
pF1KB8 KEVVHTVSLHEIDVINSRTQGFLALFS--GDT-----GEIKSEVREQINAKVAEWREEGK
::... :.::..:: :.: :: ..: :. :: ...: .:: : .. ..:
CCDS30 KEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGI
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 AEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGT-SYQSPHGIP
::..:::::.::::::::: :..:.:::::..::..:.:.::: :::: . ::::::
CCDS30 AELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIP
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB8 IDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLIT
.:::::..:. : :. .. :::..:: . : ...::.: . : .:: .:.:::..::.:
CCDS30 LDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLT
360 370 380 390 400 410
410 420 430 440 450 460
pF1KB8 AASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS
:.:. . .. . .... :: : . :.. . . :: ..
CCDS30 PANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDKYMK
420 430 440 450
>>CCDS82833.1 RUVBL1 gene_id:8607|Hs108|chr3 (315 aa)
initn: 886 init1: 310 opt: 545 Z-score: 635.1 bits: 126.3 E(32554): 4.7e-29
Smith-Waterman score: 895; 45.6% identity (73.4% similar) in 316 aa overlap (68-370:1-314)
40 50 60 70 80 90
pF1KB8 EPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD
.::::::.:: :::::::.:...:: ::
CCDS82 MAGRAVLLAGPPGTGKTALALAIAQELGSK
10 20 30
100 110 120 130 140 150
pF1KB8 TPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEI---QIDRPATGT
.:: ..:::..: :..:::.: . :::.::.:::: :. ::::.:. . . : :
CCDS82 VPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGY
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 GSKVGKLT--LKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRA
:. .... :::.. : ...::: :..:.::::: :. .: ... :: : :
CCDS82 GKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYA
100 110 120 130 140 150
220 230 240 250 260
pF1KB8 RDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFS--GDT-----
..: . . .: : :...:.::... :.::..:: :.: :: ..: :.
CCDS82 TEFDLEAEE--YVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKK
160 170 180 190 200
270 280 290 300 310 320
pF1KB8 GEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLI
:: ...: .:: : .. ..: ::..:::::.::::::::: :..:.:::::..::..:
CCDS82 TEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVI
210 220 230 240 250 260
330 340 350 360 370 380
pF1KB8 MATNRGITRIRGT-SYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSE
.:.::: :::: . ::::::.:::::..:. : :. .. ::.
CCDS82 FASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQVP
270 280 290 300 310
390 400 410 420 430 440
pF1KB8 DAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMK
463 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:30:13 2016 done: Fri Nov 4 11:30:13 2016
Total Scan time: 1.940 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]