Result of FASTA (omim) for
pF1KB8293
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8293, 302 aa
1>>>pF1KB8293 302 - 302 aa - 302 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1937+/-0.000376; mu= 2.5009+/- 0.023
mean_var=166.3658+/-34.158, 0's: 0 Z-trim(118.9): 5 B-trim: 1163 in 1/53
Lambda= 0.099436
statistics sampled from 32277 (32282) to 32277 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.379), width: 16
Scan time: 5.810
The best scores are: opt bits E(85289)
NP_061039 (OMIM: 610851) AP-1 complex-associated r ( 302) 1994 297.7 1.9e-80
XP_016863867 (OMIM: 610851) PREDICTED: AP-1 comple ( 247) 1555 234.7 1.5e-61
XP_016863868 (OMIM: 610851) PREDICTED: AP-1 comple ( 214) 1174 180.0 3.7e-45
NP_001121898 (OMIM: 610851) AP-1 complex-associate ( 269) 1174 180.0 4.4e-45
XP_016863869 (OMIM: 610851) PREDICTED: AP-1 comple ( 142) 922 143.7 2e-34
>>NP_061039 (OMIM: 610851) AP-1 complex-associated regul (302 aa)
initn: 1994 init1: 1994 opt: 1994 Z-score: 1565.3 bits: 297.7 E(85289): 1.9e-80
Smith-Waterman score: 1994; 99.7% identity (100.0% similar) in 302 aa overlap (1-302:1-302)
10 20 30 40 50 60
pF1KB8 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HRPLTEEEIVDLRERHYDSIAEKQKDLDEKIQKELALQEEKLRLEEEALYAAQREAARAA
::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
NP_061 HRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKELALQEEKLRLEEEALYAAQREAARAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KQRKLLEQERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 KQRKLLEQERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ
250 260 270 280 290 300
pF1KB8 TR
::
NP_061 TR
>>XP_016863867 (OMIM: 610851) PREDICTED: AP-1 complex-as (247 aa)
initn: 1555 init1: 1555 opt: 1555 Z-score: 1226.2 bits: 234.7 E(85289): 1.5e-61
Smith-Waterman score: 1555; 99.6% identity (100.0% similar) in 241 aa overlap (62-302:7-247)
40 50 60 70 80 90
pF1KB8 FRTCSRGEHLTIEFENLVESDEGESPGSSHRPLTEEEIVDLRERHYDSIAEKQKDLDEKI
:::::::::::::::::::::::::::.::
XP_016 MTNFNMRPLTEEEIVDLRERHYDSIAEKQKDLDKKI
10 20 30
100 110 120 130 140 150
pF1KB8 QKELALQEEKLRLEEEALYAAQREAARAAKQRKLLEQERQRIVQQYHPSNNGEYQSSGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QKELALQEEKLRLEEEALYAAQREAARAAKQRKLLEQERQRIVQQYHPSNNGEYQSSGPE
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 DDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWE
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB8 DEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVSAEMDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVSAEMDD
160 170 180 190 200 210
280 290 300
pF1KB8 NGNSEYSGFVNPVLELSDSGIRHSDTDQQTR
:::::::::::::::::::::::::::::::
XP_016 NGNSEYSGFVNPVLELSDSGIRHSDTDQQTR
220 230 240
>>XP_016863868 (OMIM: 610851) PREDICTED: AP-1 complex-as (214 aa)
initn: 1163 init1: 1163 opt: 1174 Z-score: 931.7 bits: 180.0 E(85289): 3.7e-45
Smith-Waterman score: 1287; 85.9% identity (86.3% similar) in 241 aa overlap (62-302:7-214)
40 50 60 70 80 90
pF1KB8 FRTCSRGEHLTIEFENLVESDEGESPGSSHRPLTEEEIVDLRERHYDSIAEKQKDLDEKI
:::::::::::::::::::::::::::.::
XP_016 MTNFNMRPLTEEEIVDLRERHYDSIAEKQKDLDKKI
10 20 30
100 110 120 130 140 150
pF1KB8 QKELALQEEKLRLEEEALYAAQREAARAAKQRKLLEQERQRIVQQYHPSNNGEYQSSGPE
::: ::::::::::::::::::::::::
XP_016 QKE---------------------------------QERQRIVQQYHPSNNGEYQSSGPE
40 50 60
160 170 180 190 200 210
pF1KB8 DDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWE
70 80 90 100 110 120
220 230 240 250 260 270
pF1KB8 DEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVSAEMDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVSAEMDD
130 140 150 160 170 180
280 290 300
pF1KB8 NGNSEYSGFVNPVLELSDSGIRHSDTDQQTR
:::::::::::::::::::::::::::::::
XP_016 NGNSEYSGFVNPVLELSDSGIRHSDTDQQTR
190 200 210
>>NP_001121898 (OMIM: 610851) AP-1 complex-associated re (269 aa)
initn: 1163 init1: 1163 opt: 1174 Z-score: 930.3 bits: 180.0 E(85289): 4.4e-45
Smith-Waterman score: 1726; 88.7% identity (89.1% similar) in 302 aa overlap (1-302:1-269)
10 20 30 40 50 60
pF1KB8 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HRPLTEEEIVDLRERHYDSIAEKQKDLDEKIQKELALQEEKLRLEEEALYAAQREAARAA
::::::::::::::::::::::::::::.:::::
NP_001 HRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKE--------------------------
70 80 90
130 140 150 160 170 180
pF1KB8 KQRKLLEQERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -------QERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL
100 110 120 130 140
190 200 210 220 230 240
pF1KB8 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB8 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ
210 220 230 240 250 260
pF1KB8 TR
::
NP_001 TR
>>XP_016863869 (OMIM: 610851) PREDICTED: AP-1 complex-as (142 aa)
initn: 922 init1: 922 opt: 922 Z-score: 739.0 bits: 143.7 E(85289): 2e-34
Smith-Waterman score: 922; 100.0% identity (100.0% similar) in 142 aa overlap (161-302:1-142)
140 150 160 170 180 190
pF1KB8 QRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDL
::::::::::::::::::::::::::::::
XP_016 MKSQYEVFRSSRLSSDATVLTPNTESSCDL
10 20 30
200 210 220 230 240 250
pF1KB8 MTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTS
40 50 60 70 80 90
260 270 280 290 300
pF1KB8 ASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQTR
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQTR
100 110 120 130 140
302 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:27:39 2016 done: Fri Nov 4 11:27:40 2016
Total Scan time: 5.810 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]