FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8293, 302 aa
  1>>>pF1KB8293 302 - 302 aa - 302 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7893+/-0.00091; mu= 4.9265+/- 0.055
 mean_var=155.6332+/-31.342, 0's: 0 Z-trim(111.4): 7  B-trim: 176 in 1/50
 Lambda= 0.102807
 statistics sampled from 12311 (12313) to 12311 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.378), width:  16
 Scan time:  2.370

The best scores are:                                      opt bits E(32554)
CCDS3696.1 AP1AR gene_id:55435|Hs108|chr4          ( 302) 1994 307.1   1e-83
CCDS47125.1 AP1AR gene_id:55435|Hs108|chr4         ( 269) 1174 185.5 3.9e-47


>>CCDS3696.1 AP1AR gene_id:55435|Hs108|chr4               (302 aa)
 initn: 1994 init1: 1994 opt: 1994  Z-score: 1616.3  bits: 307.1 E(32554): 1e-83
Smith-Waterman score: 1994; 99.7% identity (100.0% similar) in 302 aa overlap (1-302:1-302)

               10        20        30        40        50        60
pF1KB8 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HRPLTEEEIVDLRERHYDSIAEKQKDLDEKIQKELALQEEKLRLEEEALYAAQREAARAA
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS36 HRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKELALQEEKLRLEEEALYAAQREAARAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 KQRKLLEQERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 KQRKLLEQERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ
              250       260       270       280       290       300

         
pF1KB8 TR
       ::
CCDS36 TR
         

>>CCDS47125.1 AP1AR gene_id:55435|Hs108|chr4              (269 aa)
 initn: 1163 init1: 1163 opt: 1174  Z-score: 959.8  bits: 185.5 E(32554): 3.9e-47
Smith-Waterman score: 1726; 88.7% identity (89.1% similar) in 302 aa overlap (1-302:1-269)

               10        20        30        40        50        60
pF1KB8 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HRPLTEEEIVDLRERHYDSIAEKQKDLDEKIQKELALQEEKLRLEEEALYAAQREAARAA
       ::::::::::::::::::::::::::::.:::::                          
CCDS47 HRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKE--------------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KB8 KQRKLLEQERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 -------QERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL
                 100       110       120       130       140       

              190       200       210       220       230       240
pF1KB8 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS
       150       160       170       180       190       200       

              250       260       270       280       290       300
pF1KB8 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ
       210       220       230       240       250       260       

         
pF1KB8 TR
       ::
CCDS47 TR
         




302 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:27:38 2016 done: Fri Nov  4 11:27:38 2016
 Total Scan time:  2.370 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]