Result of FASTA (omim) for
pF1KB8290
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8290, 561 aa
1>>>pF1KB8290 561 - 561 aa - 561 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 15.3239+/-0.000453; mu= -30.5922+/- 0.028
mean_var=501.4655+/-103.663, 0's: 0 Z-trim(122.6): 46 B-trim: 0 in 0/56
Lambda= 0.057273
statistics sampled from 40976 (41022) to 40976 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.481), width: 16
Scan time: 10.920
The best scores are: opt bits E(85289)
XP_005251526 (OMIM: 600728) PREDICTED: nuclear fac ( 561) 3873 334.7 4.8e-91
XP_006716836 (OMIM: 600728) PREDICTED: nuclear fac ( 569) 3822 330.5 9e-90
NP_001177666 (OMIM: 600728) nuclear factor 1 B-typ ( 494) 3372 293.3 1.2e-78
XP_006716837 (OMIM: 600728) PREDICTED: nuclear fac ( 503) 3201 279.1 2.2e-74
XP_005251524 (OMIM: 600728) PREDICTED: nuclear fac ( 570) 3201 279.2 2.5e-74
XP_006716838 (OMIM: 600728) PREDICTED: nuclear fac ( 498) 3197 278.8 2.8e-74
XP_005251525 (OMIM: 600728) PREDICTED: nuclear fac ( 566) 3132 273.5 1.3e-72
NP_005587 (OMIM: 600728) nuclear factor 1 B-type i ( 420) 2876 252.3 2.3e-66
XP_005251527 (OMIM: 600728) PREDICTED: nuclear fac ( 487) 2878 252.4 2.4e-66
XP_016870228 (OMIM: 600728) PREDICTED: nuclear fac ( 419) 2858 250.8 6.5e-66
NP_001177667 (OMIM: 600728) nuclear factor 1 B-typ ( 446) 2810 246.8 1.1e-64
XP_016870229 (OMIM: 600728) PREDICTED: nuclear fac ( 416) 2807 246.6 1.2e-64
XP_016870230 (OMIM: 600728) PREDICTED: nuclear fac ( 415) 2789 245.1 3.4e-64
NP_001269716 (OMIM: 600728) nuclear factor 1 B-typ ( 309) 2146 191.9 2.6e-48
NP_001128145 (OMIM: 600727) nuclear factor 1 A-typ ( 509) 1857 168.1 6.1e-41
NP_001138984 (OMIM: 600727) nuclear factor 1 A-typ ( 554) 1858 168.2 6.2e-41
NP_005586 (OMIM: 600727) nuclear factor 1 A-type i ( 498) 1852 167.7 8e-41
XP_005259975 (OMIM: 164005,602535,614753) PREDICTE ( 502) 1797 163.1 1.9e-39
NP_001138983 (OMIM: 600727) nuclear factor 1 A-typ ( 501) 1795 163.0 2.1e-39
XP_016856851 (OMIM: 600727) PREDICTED: nuclear fac ( 490) 1790 162.5 2.7e-39
XP_011526342 (OMIM: 164005,602535,614753) PREDICTE ( 518) 1739 158.3 5.4e-38
XP_005259977 (OMIM: 164005,602535,614753) PREDICTE ( 494) 1738 158.3 5.4e-38
NP_001257972 (OMIM: 164005,602535,614753) nuclear ( 510) 1738 158.3 5.6e-38
NP_001231931 (OMIM: 600729) nuclear factor 1 C-typ ( 508) 1630 149.3 2.7e-35
XP_016882323 (OMIM: 600729) PREDICTED: nuclear fac ( 565) 1630 149.4 3e-35
XP_005259621 (OMIM: 600729) PREDICTED: nuclear fac ( 511) 1615 148.1 6.4e-35
XP_016870231 (OMIM: 600728) PREDICTED: nuclear fac ( 308) 1607 147.3 6.5e-35
NP_002492 (OMIM: 164005,602535,614753) nuclear fac ( 441) 1611 147.7 7.1e-35
XP_011539817 (OMIM: 600727) PREDICTED: nuclear fac ( 516) 1610 147.7 8.6e-35
XP_011539814 (OMIM: 600727) PREDICTED: nuclear fac ( 527) 1610 147.7 8.8e-35
NP_995315 (OMIM: 600729) nuclear factor 1 C-type i ( 499) 1578 145.0 5.2e-34
XP_006722822 (OMIM: 600729) PREDICTED: nuclear fac ( 556) 1578 145.1 5.8e-34
NP_001257973 (OMIM: 164005,602535,614753) nuclear ( 433) 1552 142.9 2e-33
XP_005259976 (OMIM: 164005,602535,614753) PREDICTE ( 500) 1553 143.0 2.2e-33
NP_001231933 (OMIM: 600729) nuclear factor 1 C-typ ( 439) 1549 142.6 2.5e-33
XP_016882324 (OMIM: 600729) PREDICTED: nuclear fac ( 439) 1549 142.6 2.5e-33
XP_011539816 (OMIM: 600727) PREDICTED: nuclear fac ( 519) 1548 142.6 3e-33
NP_005588 (OMIM: 600729) nuclear factor 1 C-type i ( 428) 1541 141.9 3.8e-33
NP_001231934 (OMIM: 600729) nuclear factor 1 C-typ ( 430) 1497 138.3 4.8e-32
XP_016882325 (OMIM: 600729) PREDICTED: nuclear fac ( 419) 1489 137.6 7.3e-32
XP_005251528 (OMIM: 600728) PREDICTED: nuclear fac ( 318) 1474 136.4 1.4e-31
XP_016882326 (OMIM: 164005,602535,614753) PREDICTE ( 400) 1469 136.0 2.2e-31
XP_005259974 (OMIM: 164005,602535,614753) PREDICTE ( 520) 1417 131.7 5.5e-30
XP_006722823 (OMIM: 164005,602535,614753) PREDICTE ( 459) 1411 131.2 6.9e-30
>>XP_005251526 (OMIM: 600728) PREDICTED: nuclear factor (561 aa)
initn: 3873 init1: 3873 opt: 3873 Z-score: 1755.6 bits: 334.7 E(85289): 4.8e-91
Smith-Waterman score: 3873; 100.0% identity (100.0% similar) in 561 aa overlap (1-561:1-561)
10 20 30 40 50 60
pF1KB8 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNGSG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 QVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEAYTASGTSQANRYVGLSPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEAYTASGTSQANRYVGLSPR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 DPSFLHQQQLRICDWTMNQNGRHLYPSTSEDTLGITWQSPGTWASLVPFQVSNRTPILPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DPSFLHQQQLRICDWTMNQNGRHLYPSTSEDTLGITWQSPGTWASLVPFQVSNRTPILPA
490 500 510 520 530 540
550 560
pF1KB8 NVQNYGLNIIGEPFLQAETSN
:::::::::::::::::::::
XP_005 NVQNYGLNIIGEPFLQAETSN
550 560
>>XP_006716836 (OMIM: 600728) PREDICTED: nuclear factor (569 aa)
initn: 3246 init1: 2452 opt: 3822 Z-score: 1732.7 bits: 330.5 E(85289): 9e-90
Smith-Waterman score: 3822; 97.9% identity (98.2% similar) in 570 aa overlap (1-561:1-569)
10 20 30 40 50 60
pF1KB8 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
:::::::::::::::::::::::::::::::::::::::::::::::::::: .::::::
XP_006 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAH-IISTRTP
310 320 330 340 350
370 380 390 400 410 420
pF1KB8 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNGSG
360 370 380 390 400 410
430 440 450 460 470
pF1KB8 QVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEA---------YTASGTSQA
:::::::::::::::::::::::::::::::::::::::::. :::::::::
XP_006 QVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEGEAASPTATTYTASGTSQA
420 430 440 450 460 470
480 490 500 510 520 530
pF1KB8 NRYVGLSPRDPSFLHQQQLRICDWTMNQNGRHLYPSTSEDTLGITWQSPGTWASLVPFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NRYVGLSPRDPSFLHQQQLRICDWTMNQNGRHLYPSTSEDTLGITWQSPGTWASLVPFQV
480 490 500 510 520 530
540 550 560
pF1KB8 SNRTPILPANVQNYGLNIIGEPFLQAETSN
::::::::::::::::::::::::::::::
XP_006 SNRTPILPANVQNYGLNIIGEPFLQAETSN
540 550 560
>>NP_001177666 (OMIM: 600728) nuclear factor 1 B-type is (494 aa)
initn: 3372 init1: 3372 opt: 3372 Z-score: 1532.7 bits: 293.3 E(85289): 1.2e-78
Smith-Waterman score: 3372; 100.0% identity (100.0% similar) in 489 aa overlap (1-489:1-489)
10 20 30 40 50 60
pF1KB8 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNGSG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 QVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEAYTASGTSQANRYVGLSPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEAYTASGTSQANRYVGLSPR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 DPSFLHQQQLRICDWTMNQNGRHLYPSTSEDTLGITWQSPGTWASLVPFQVSNRTPILPA
:::::::::
NP_001 DPSFLHQQQSWYLG
490
>>XP_006716837 (OMIM: 600728) PREDICTED: nuclear factor (503 aa)
initn: 3197 init1: 3197 opt: 3201 Z-score: 1456.2 bits: 279.1 E(85289): 2.2e-74
Smith-Waterman score: 3339; 98.0% identity (98.2% similar) in 498 aa overlap (1-489:1-498)
10 20 30 40 50 60
pF1KB8 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNGSG
370 380 390 400 410 420
430 440 450 460 470
pF1KB8 QVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEA---------YTASGTSQA
:::::::::::::::::::::::::::::::::::::::::. :::::::::
XP_006 QVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEGEAASPTATTYTASGTSQA
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB8 NRYVGLSPRDPSFLHQQQLRICDWTMNQNGRHLYPSTSEDTLGITWQSPGTWASLVPFQV
::::::::::::::::::
XP_006 NRYVGLSPRDPSFLHQQQSWYLG
490 500
>>XP_005251524 (OMIM: 600728) PREDICTED: nuclear factor (570 aa)
initn: 3197 init1: 3197 opt: 3201 Z-score: 1455.4 bits: 279.2 E(85289): 2.5e-74
Smith-Waterman score: 3840; 98.2% identity (98.4% similar) in 570 aa overlap (1-561:1-570)
10 20 30 40 50 60
pF1KB8 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNGSG
370 380 390 400 410 420
430 440 450 460 470
pF1KB8 QVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEA---------YTASGTSQA
:::::::::::::::::::::::::::::::::::::::::. :::::::::
XP_005 QVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEGEAASPTATTYTASGTSQA
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB8 NRYVGLSPRDPSFLHQQQLRICDWTMNQNGRHLYPSTSEDTLGITWQSPGTWASLVPFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NRYVGLSPRDPSFLHQQQLRICDWTMNQNGRHLYPSTSEDTLGITWQSPGTWASLVPFQV
490 500 510 520 530 540
540 550 560
pF1KB8 SNRTPILPANVQNYGLNIIGEPFLQAETSN
::::::::::::::::::::::::::::::
XP_005 SNRTPILPANVQNYGLNIIGEPFLQAETSN
550 560 570
>>XP_006716838 (OMIM: 600728) PREDICTED: nuclear factor (498 aa)
initn: 3197 init1: 3197 opt: 3197 Z-score: 1454.5 bits: 278.8 E(85289): 2.8e-74
Smith-Waterman score: 3197; 98.9% identity (99.6% similar) in 469 aa overlap (1-469:1-469)
10 20 30 40 50 60
pF1KB8 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNGSG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 QVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEAYTASGTSQANRYVGLSPR
:::::::::::::::::::::::::::::::::::::::::. .:: :.
XP_006 QVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEGEAASPTATILVPGLAWFL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 DPSFLHQQQLRICDWTMNQNGRHLYPSTSEDTLGITWQSPGTWASLVPFQVSNRTPILPA
XP_006 SKCQIGHPSYRPMSKITV
490
>>XP_005251525 (OMIM: 600728) PREDICTED: nuclear factor (566 aa)
initn: 3125 init1: 3125 opt: 3132 Z-score: 1424.6 bits: 273.5 E(85289): 1.3e-72
Smith-Waterman score: 3771; 97.0% identity (97.5% similar) in 570 aa overlap (1-561:1-566)
10 20 30 40 50 60
pF1KB8 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
:.:: . ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQYSAM----DEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB8 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB8 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB8 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNGSG
360 370 380 390 400 410
430 440 450 460 470
pF1KB8 QVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEA---------YTASGTSQA
:::::::::::::::::::::::::::::::::::::::::. :::::::::
XP_005 QVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEGEAASPTATTYTASGTSQA
420 430 440 450 460 470
480 490 500 510 520 530
pF1KB8 NRYVGLSPRDPSFLHQQQLRICDWTMNQNGRHLYPSTSEDTLGITWQSPGTWASLVPFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NRYVGLSPRDPSFLHQQQLRICDWTMNQNGRHLYPSTSEDTLGITWQSPGTWASLVPFQV
480 490 500 510 520 530
540 550 560
pF1KB8 SNRTPILPANVQNYGLNIIGEPFLQAETSN
::::::::::::::::::::::::::::::
XP_005 SNRTPILPANVQNYGLNIIGEPFLQAETSN
540 550 560
>>NP_005587 (OMIM: 600728) nuclear factor 1 B-type isofo (420 aa)
initn: 2902 init1: 2876 opt: 2876 Z-score: 1312.3 bits: 252.3 E(85289): 2.3e-66
Smith-Waterman score: 2876; 100.0% identity (100.0% similar) in 415 aa overlap (1-415:1-415)
10 20 30 40 50 60
pF1KB8 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNGSG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQSWYLG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 QVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEAYTASGTSQANRYVGLSPR
>>XP_005251527 (OMIM: 600728) PREDICTED: nuclear factor (487 aa)
initn: 2876 init1: 2876 opt: 2878 Z-score: 1312.2 bits: 252.4 E(85289): 2.4e-66
Smith-Waterman score: 3219; 86.8% identity (86.8% similar) in 561 aa overlap (1-561:1-487)
10 20 30 40 50 60
pF1KB8 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNGSG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQ-----
370 380 390 400 410
430 440 450 460 470 480
pF1KB8 QVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEAYTASGTSQANRYVGLSPR
XP_005 ------------------------------------------------------------
490 500 510 520 530 540
pF1KB8 DPSFLHQQQLRICDWTMNQNGRHLYPSTSEDTLGITWQSPGTWASLVPFQVSNRTPILPA
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ---------LRICDWTMNQNGRHLYPSTSEDTLGITWQSPGTWASLVPFQVSNRTPILPA
420 430 440 450 460
550 560
pF1KB8 NVQNYGLNIIGEPFLQAETSN
:::::::::::::::::::::
XP_005 NVQNYGLNIIGEPFLQAETSN
470 480
>>XP_016870228 (OMIM: 600728) PREDICTED: nuclear factor (419 aa)
initn: 2520 init1: 2452 opt: 2858 Z-score: 1304.3 bits: 250.8 E(85289): 6.5e-66
Smith-Waterman score: 2858; 99.5% identity (99.8% similar) in 415 aa overlap (1-415:1-414)
10 20 30 40 50 60
pF1KB8 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPAAGS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTP
:::::::::::::::::::::::::::::::::::::::::::::::::::: .::::::
XP_016 RTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAH-IISTRTP
310 320 330 340 350
370 380 390 400 410 420
pF1KB8 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNGSG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQSWYLG
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB8 QVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEAYTASGTSQANRYVGLSPR
561 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 20:30:32 2016 done: Sat Nov 5 20:30:33 2016
Total Scan time: 10.920 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]