Result of FASTA (omim) for
pF1KB8286
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8286, 399 aa
1>>>pF1KB8286 399 - 399 aa - 399 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2215+/-0.000458; mu= 11.2390+/- 0.028
mean_var=62.5690+/-12.406, 0's: 0 Z-trim(108.9): 26 B-trim: 91 in 1/52
Lambda= 0.162142
statistics sampled from 16974 (17000) to 16974 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.564), E-opt: 0.2 (0.199), width: 16
Scan time: 6.870
The best scores are: opt bits E(85289)
XP_006716189 (OMIM: 602318) PREDICTED: transcripti ( 399) 2584 613.5 2.7e-175
NP_008911 (OMIM: 602318) transcription termination ( 399) 2584 613.5 2.7e-175
XP_005250650 (OMIM: 602318) PREDICTED: transcripti ( 399) 2584 613.5 2.7e-175
NP_001288064 (OMIM: 602318) transcription terminat ( 379) 2466 585.9 5.3e-167
NP_001288063 (OMIM: 602318) transcription terminat ( 379) 2466 585.9 5.3e-167
XP_016868109 (OMIM: 602318) PREDICTED: transcripti ( 379) 2466 585.9 5.3e-167
NP_001028222 (OMIM: 616929) transcription terminat ( 385) 515 129.6 1.3e-29
NP_079474 (OMIM: 616929) transcription termination ( 385) 515 129.6 1.3e-29
XP_011537069 (OMIM: 616929) PREDICTED: transcripti ( 385) 515 129.6 1.3e-29
XP_016875476 (OMIM: 616929) PREDICTED: transcripti ( 385) 515 129.6 1.3e-29
XP_016875474 (OMIM: 616929) PREDICTED: transcripti ( 385) 515 129.6 1.3e-29
XP_016875475 (OMIM: 616929) PREDICTED: transcripti ( 385) 515 129.6 1.3e-29
>>XP_006716189 (OMIM: 602318) PREDICTED: transcription t (399 aa)
initn: 2584 init1: 2584 opt: 2584 Z-score: 3268.0 bits: 613.5 E(85289): 2.7e-175
Smith-Waterman score: 2584; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)
10 20 30 40 50 60
pF1KB8 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK
310 320 330 340 350 360
370 380 390
pF1KB8 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
:::::::::::::::::::::::::::::::::::::::
XP_006 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
370 380 390
>>NP_008911 (OMIM: 602318) transcription termination fac (399 aa)
initn: 2584 init1: 2584 opt: 2584 Z-score: 3268.0 bits: 613.5 E(85289): 2.7e-175
Smith-Waterman score: 2584; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)
10 20 30 40 50 60
pF1KB8 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK
310 320 330 340 350 360
370 380 390
pF1KB8 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
:::::::::::::::::::::::::::::::::::::::
NP_008 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
370 380 390
>>XP_005250650 (OMIM: 602318) PREDICTED: transcription t (399 aa)
initn: 2584 init1: 2584 opt: 2584 Z-score: 3268.0 bits: 613.5 E(85289): 2.7e-175
Smith-Waterman score: 2584; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)
10 20 30 40 50 60
pF1KB8 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK
310 320 330 340 350 360
370 380 390
pF1KB8 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
:::::::::::::::::::::::::::::::::::::::
XP_005 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
370 380 390
>>NP_001288064 (OMIM: 602318) transcription termination (379 aa)
initn: 2466 init1: 2466 opt: 2466 Z-score: 3119.2 bits: 585.9 E(85289): 5.3e-167
Smith-Waterman score: 2466; 100.0% identity (100.0% similar) in 379 aa overlap (21-399:1-379)
10 20 30 40 50 60
pF1KB8 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
::::::::::::::::::::::::::::::::::::::::
NP_001 MAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
10 20 30 40
70 80 90 100 110 120
pF1KB8 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB8 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK
290 300 310 320 330 340
370 380 390
pF1KB8 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
:::::::::::::::::::::::::::::::::::::::
NP_001 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
350 360 370
>>NP_001288063 (OMIM: 602318) transcription termination (379 aa)
initn: 2466 init1: 2466 opt: 2466 Z-score: 3119.2 bits: 585.9 E(85289): 5.3e-167
Smith-Waterman score: 2466; 100.0% identity (100.0% similar) in 379 aa overlap (21-399:1-379)
10 20 30 40 50 60
pF1KB8 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
::::::::::::::::::::::::::::::::::::::::
NP_001 MAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
10 20 30 40
70 80 90 100 110 120
pF1KB8 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB8 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK
290 300 310 320 330 340
370 380 390
pF1KB8 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
:::::::::::::::::::::::::::::::::::::::
NP_001 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
350 360 370
>>XP_016868109 (OMIM: 602318) PREDICTED: transcription t (379 aa)
initn: 2466 init1: 2466 opt: 2466 Z-score: 3119.2 bits: 585.9 E(85289): 5.3e-167
Smith-Waterman score: 2466; 100.0% identity (100.0% similar) in 379 aa overlap (21-399:1-379)
10 20 30 40 50 60
pF1KB8 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
::::::::::::::::::::::::::::::::::::::::
XP_016 MAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
10 20 30 40
70 80 90 100 110 120
pF1KB8 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB8 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK
290 300 310 320 330 340
370 380 390
pF1KB8 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
:::::::::::::::::::::::::::::::::::::::
XP_016 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
350 360 370
>>NP_001028222 (OMIM: 616929) transcription termination (385 aa)
initn: 557 init1: 282 opt: 515 Z-score: 652.6 bits: 129.6 E(85289): 1.3e-29
Smith-Waterman score: 515; 28.3% identity (64.8% similar) in 375 aa overlap (26-395:2-366)
10 20 30 40 50 60
pF1KB8 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
::.. .: .. : . : ... . ..: : .
NP_001 MLWKL---LLRSQSCRLCSF--RKMRSPPKYRPF-L
10 20 30
70 80 90 100 110
pF1KB8 KC--HNTDSEPLK-NEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGAS
: ..::.. : : ...: .::: :. . :. . : ... .: ::.
NP_001 ACFTYTTDKQSSKENTRTVEKLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGAD
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB8 KEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLE
. ..:::. : :.::. .: .. . ::. . .. :.....:. ::::: ... : .
NP_001 ETAVASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQK
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB8 NNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPAD--FVR
:..:. .:: . :::: :: .: : .. :::::..:: . :..: .. ..
NP_001 LNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLL
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB8 KIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYAN
:.. .:::::..: .: ..:::. ...: :.: :. . ...: . : .
NP_001 KLLSQNPFILLNSPTAIKETLEFLQEQ-GFTSFEILQLLSKLKGFLFQLCPRSIQNSISF
220 230 240 250 260
300 310 320 330 340 350
pF1KB8 IKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSS
:. .. ::.......::. : ... . ...... :..:.:::.:: :.: ::. .
NP_001 SKN---AFKCTDHDLKQLVLKCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELT
270 280 290 300 310 320
360 370 380 390
pF1KB8 ISTLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
. .. ::..: ..: .. ... :. :::..::.. :.
NP_001 PQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFEANFGKIQAKKVRPLFNPVAPLNVEE
330 340 350 360 370 380
>>NP_079474 (OMIM: 616929) transcription termination fac (385 aa)
initn: 557 init1: 282 opt: 515 Z-score: 652.6 bits: 129.6 E(85289): 1.3e-29
Smith-Waterman score: 515; 28.3% identity (64.8% similar) in 375 aa overlap (26-395:2-366)
10 20 30 40 50 60
pF1KB8 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
::.. .: .. : . : ... . ..: : .
NP_079 MLWKL---LLRSQSCRLCSF--RKMRSPPKYRPF-L
10 20 30
70 80 90 100 110
pF1KB8 KC--HNTDSEPLK-NEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGAS
: ..::.. : : ...: .::: :. . :. . : ... .: ::.
NP_079 ACFTYTTDKQSSKENTRTVEKLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGAD
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB8 KEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLE
. ..:::. : :.::. .: .. . ::. . .. :.....:. ::::: ... : .
NP_079 ETAVASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQK
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB8 NNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPAD--FVR
:..:. .:: . :::: :: .: : .. :::::..:: . :..: .. ..
NP_079 LNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLL
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB8 KIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYAN
:.. .:::::..: .: ..:::. ...: :.: :. . ...: . : .
NP_079 KLLSQNPFILLNSPTAIKETLEFLQEQ-GFTSFEILQLLSKLKGFLFQLCPRSIQNSISF
220 230 240 250 260
300 310 320 330 340 350
pF1KB8 IKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSS
:. .. ::.......::. : ... . ...... :..:.:::.:: :.: ::. .
NP_079 SKN---AFKCTDHDLKQLVLKCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELT
270 280 290 300 310 320
360 370 380 390
pF1KB8 ISTLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
. .. ::..: ..: .. ... :. :::..::.. :.
NP_079 PQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFEANFGKIQAKKVRPLFNPVAPLNVEE
330 340 350 360 370 380
>>XP_011537069 (OMIM: 616929) PREDICTED: transcription t (385 aa)
initn: 557 init1: 282 opt: 515 Z-score: 652.6 bits: 129.6 E(85289): 1.3e-29
Smith-Waterman score: 515; 28.3% identity (64.8% similar) in 375 aa overlap (26-395:2-366)
10 20 30 40 50 60
pF1KB8 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
::.. .: .. : . : ... . ..: : .
XP_011 MLWKL---LLRSQSCRLCSF--RKMRSPPKYRPF-L
10 20 30
70 80 90 100 110
pF1KB8 KC--HNTDSEPLK-NEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGAS
: ..::.. : : ...: .::: :. . :. . : ... .: ::.
XP_011 ACFTYTTDKQSSKENTRTVEKLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGAD
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB8 KEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLE
. ..:::. : :.::. .: .. . ::. . .. :.....:. ::::: ... : .
XP_011 ETAVASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQK
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB8 NNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPAD--FVR
:..:. .:: . :::: :: .: : .. :::::..:: . :..: .. ..
XP_011 LNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLL
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB8 KIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYAN
:.. .:::::..: .: ..:::. ...: :.: :. . ...: . : .
XP_011 KLLSQNPFILLNSPTAIKETLEFLQEQ-GFTSFEILQLLSKLKGFLFQLCPRSIQNSISF
220 230 240 250 260
300 310 320 330 340 350
pF1KB8 IKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSS
:. .. ::.......::. : ... . ...... :..:.:::.:: :.: ::. .
XP_011 SKN---AFKCTDHDLKQLVLKCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELT
270 280 290 300 310 320
360 370 380 390
pF1KB8 ISTLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
. .. ::..: ..: .. ... :. :::..::.. :.
XP_011 PQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFEANFGKIQAKKVRPLFNPVAPLNVEE
330 340 350 360 370 380
>>XP_016875476 (OMIM: 616929) PREDICTED: transcription t (385 aa)
initn: 557 init1: 282 opt: 515 Z-score: 652.6 bits: 129.6 E(85289): 1.3e-29
Smith-Waterman score: 515; 28.3% identity (64.8% similar) in 375 aa overlap (26-395:2-366)
10 20 30 40 50 60
pF1KB8 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
::.. .: .. : . : ... . ..: : .
XP_016 MLWKL---LLRSQSCRLCSF--RKMRSPPKYRPF-L
10 20 30
70 80 90 100 110
pF1KB8 KC--HNTDSEPLK-NEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGAS
: ..::.. : : ...: .::: :. . :. . : ... .: ::.
XP_016 ACFTYTTDKQSSKENTRTVEKLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGAD
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB8 KEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLE
. ..:::. : :.::. .: .. . ::. . .. :.....:. ::::: ... : .
XP_016 ETAVASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQK
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB8 NNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPAD--FVR
:..:. .:: . :::: :: .: : .. :::::..:: . :..: .. ..
XP_016 LNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLL
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB8 KIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYAN
:.. .:::::..: .: ..:::. ...: :.: :. . ...: . : .
XP_016 KLLSQNPFILLNSPTAIKETLEFLQEQ-GFTSFEILQLLSKLKGFLFQLCPRSIQNSISF
220 230 240 250 260
300 310 320 330 340 350
pF1KB8 IKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSS
:. .. ::.......::. : ... . ...... :..:.:::.:: :.: ::. .
XP_016 SKN---AFKCTDHDLKQLVLKCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELT
270 280 290 300 310 320
360 370 380 390
pF1KB8 ISTLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
. .. ::..: ..: .. ... :. :::..::.. :.
XP_016 PQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFEANFGKIQAKKVRPLFNPVAPLNVEE
330 340 350 360 370 380
399 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:24:47 2016 done: Fri Nov 4 11:24:48 2016
Total Scan time: 6.870 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]