FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8286, 399 aa
  1>>>pF1KB8286 399 - 399 aa - 399 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9876+/-0.00106; mu= 12.4428+/- 0.064
 mean_var=58.8299+/-11.747, 0's: 0 Z-trim(102.0): 17  B-trim: 0 in 0/49
 Lambda= 0.167215
 statistics sampled from 6763 (6769) to 6763 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.577), E-opt: 0.2 (0.208), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS5621.1 MTERF1 gene_id:7978|Hs108|chr7          ( 399) 2584 632.1 2.7e-181
CCDS75629.1 MTERF1 gene_id:7978|Hs108|chr7         ( 379) 2466 603.6 9.6e-173
CCDS9111.1 MTERF2 gene_id:80298|Hs108|chr12        ( 385)  515 133.0 4.7e-31


>>CCDS5621.1 MTERF1 gene_id:7978|Hs108|chr7               (399 aa)
 initn: 2584 init1: 2584 opt: 2584  Z-score: 3368.2  bits: 632.1 E(32554): 2.7e-181
Smith-Waterman score: 2584; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)

               10        20        30        40        50        60
pF1KB8 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK
              310       320       330       340       350       360

              370       380       390         
pF1KB8 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
       :::::::::::::::::::::::::::::::::::::::
CCDS56 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
              370       380       390         

>>CCDS75629.1 MTERF1 gene_id:7978|Hs108|chr7              (379 aa)
 initn: 2466 init1: 2466 opt: 2466  Z-score: 3214.8  bits: 603.6 E(32554): 9.6e-173
Smith-Waterman score: 2466; 100.0% identity (100.0% similar) in 379 aa overlap (21-399:1-379)

               10        20        30        40        50        60
pF1KB8 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
                           ::::::::::::::::::::::::::::::::::::::::
CCDS75                     MAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
                                   10        20        30        40

               70        80        90       100       110       120
pF1KB8 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEV
               50        60        70        80        90       100

              130       140       150       160       170       180
pF1KB8 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNI
              110       120       130       140       150       160

              190       200       210       220       230       240
pF1KB8 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFK
              170       180       190       200       210       220

              250       260       270       280       290       300
pF1KB8 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL
              230       240       250       260       270       280

              310       320       330       340       350       360
pF1KB8 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLK
              290       300       310       320       330       340

              370       380       390         
pF1KB8 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
       :::::::::::::::::::::::::::::::::::::::
CCDS75 SRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA
              350       360       370         

>>CCDS9111.1 MTERF2 gene_id:80298|Hs108|chr12             (385 aa)
 initn: 557 init1: 282 opt: 515  Z-score: 671.0  bits: 133.0 E(32554): 4.7e-31
Smith-Waterman score: 515; 28.3% identity (64.8% similar) in 375 aa overlap (26-395:2-366)

               10        20        30        40        50        60
pF1KB8 MQSLSLGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGV
                                ::..   .: .. : .  :  ... .  ..: : .
CCDS91                         MLWKL---LLRSQSCRLCSF--RKMRSPPKYRPF-L
                                          10          20         30

                 70         80        90       100       110       
pF1KB8 KC--HNTDSEPLK-NEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGAS
        :  ..::..  : :   ...:   .:::   :. .  :. .  :  ...  .:   ::.
CCDS91 ACFTYTTDKQSSKENTRTVEKLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGAD
               40        50        60        70        80        90

       120       130       140       150       160       170       
pF1KB8 KEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLE
       . ..:::. : :.::. .:  .. .  ::. .  .. :.....:. :::::  ... : .
CCDS91 ETAVASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQK
              100       110       120       130       140       150

       180       190       200       210       220       230       
pF1KB8 NNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPAD--FVR
        :..:.  .::    . :::: :: .: : .. :::::..:: . :..: ..     .. 
CCDS91 LNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLL
              160       170       180       190       200       210

         240       250       260       270       280       290     
pF1KB8 KIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYAN
       :.. .:::::..:   .: ..:::.   ...: :.: :.    . ...:     . : . 
CCDS91 KLLSQNPFILLNSPTAIKETLEFLQEQ-GFTSFEILQLLSKLKGFLFQLCPRSIQNSISF
              220       230        240       250       260         

         300       310       320       330       340       350     
pF1KB8 IKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQIIENPRVLDSS
        :.   .. ::.......::. : ... .   ...... :..:.:::.:: :.: ::. .
CCDS91 SKN---AFKCTDHDLKQLVLKCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELT
     270          280       290       300       310       320      

         360       370       380       390                        
pF1KB8 ISTLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKLSRFA               
        . .. ::..: ..:  ..  ... :. :::..::.. :.                   
CCDS91 PQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFEANFGKIQAKKVRPLFNPVAPLNVEE
        330       340       350       360       370       380     




399 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:24:47 2016 done: Fri Nov  4 11:24:47 2016
 Total Scan time:  2.510 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]