FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8280, 190 aa
  1>>>pF1KB8280 190 - 190 aa - 190 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5746+/-0.000373; mu= 13.9005+/- 0.023
 mean_var=158.7425+/-33.328, 0's: 0 Z-trim(117.9): 99  B-trim: 1548 in 1/53
 Lambda= 0.101795
 statistics sampled from 30127 (30241) to 30127 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.355), width:  16
 Scan time:  4.400

The best scores are:                                      opt bits E(85289)
NP_001171938 (OMIM: 602850) E3 ubiquitin-protein l ( 190) 1281 199.3 3.2e-51
NP_002929 (OMIM: 602850) E3 ubiquitin-protein liga ( 190) 1281 199.3 3.2e-51
NP_001171939 (OMIM: 602850) E3 ubiquitin-protein l ( 113)  440 75.4 3.6e-14


>>NP_001171938 (OMIM: 602850) E3 ubiquitin-protein ligas  (190 aa)
 initn: 1281 init1: 1281 opt: 1281  Z-score: 1040.6  bits: 199.3 E(85289): 3.2e-51
Smith-Waterman score: 1281; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)

               10        20        30        40        50        60
pF1KB8 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LTHNDSVVIVDERRRPRRNARRLPQDHADSCVVSSDDEELSRDRDVYVTTHTPRNARDEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTHNDSVVIVDERRRPRRNARRLPQDHADSCVVSSDDEELSRDRDVYVTTHTPRNARDEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI
              130       140       150       160       170       180

              190
pF1KB8 NHKRYHPIYI
       ::::::::::
NP_001 NHKRYHPIYI
              190

>>NP_002929 (OMIM: 602850) E3 ubiquitin-protein ligase R  (190 aa)
 initn: 1281 init1: 1281 opt: 1281  Z-score: 1040.6  bits: 199.3 E(85289): 3.2e-51
Smith-Waterman score: 1281; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)

               10        20        30        40        50        60
pF1KB8 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LTHNDSVVIVDERRRPRRNARRLPQDHADSCVVSSDDEELSRDRDVYVTTHTPRNARDEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LTHNDSVVIVDERRRPRRNARRLPQDHADSCVVSSDDEELSRDRDVYVTTHTPRNARDEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI
              130       140       150       160       170       180

              190
pF1KB8 NHKRYHPIYI
       ::::::::::
NP_002 NHKRYHPIYI
              190

>>NP_001171939 (OMIM: 602850) E3 ubiquitin-protein ligas  (113 aa)
 initn: 440 init1: 440 opt: 440  Z-score: 375.4  bits: 75.4 E(85289): 3.6e-14
Smith-Waterman score: 443; 72.5% identity (78.9% similar) in 109 aa overlap (1-95:1-109)

               10        20        30        40        50        60
pF1KB8 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
               10        20        30        40        50        60

               70                      80        90       100      
pF1KB8 LTHNDSVVIVD--------------ERRRPRRNARRLPQDHADSCVVSSDDEELSRDRDV
       :::::::::::               .:  : ..  .::. : : :.:.           
NP_001 LTHNDSVVIVDGPQVLSVVPSAWTDTQRSCRMDVSSFPQNAAMSSVASASVIP       
               70        80        90       100       110          

        110       120       130       140       150       160      
pF1KB8 YVTTHTPRNARDEGATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS




190 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:20:07 2016 done: Fri Nov  4 11:20:07 2016
 Total Scan time:  4.400 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]