FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8280, 190 aa
  1>>>pF1KB8280 190 - 190 aa - 190 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4153+/-0.000897; mu= 9.0862+/- 0.054
 mean_var=154.8560+/-33.418, 0's: 0 Z-trim(110.9): 71  B-trim: 85 in 1/50
 Lambda= 0.103065
 statistics sampled from 11948 (11996) to 11948 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.368), width:  16
 Scan time:  1.910

The best scores are:                                      opt bits E(32554)
CCDS47001.1 RNF4 gene_id:6047|Hs108|chr4           ( 190) 1281 201.5 2.5e-52
CCDS54713.1 RNF4 gene_id:6047|Hs108|chr4           ( 113)  440 76.2 7.9e-15


>>CCDS47001.1 RNF4 gene_id:6047|Hs108|chr4                (190 aa)
 initn: 1281 init1: 1281 opt: 1281  Z-score: 1052.8  bits: 201.5 E(32554): 2.5e-52
Smith-Waterman score: 1281; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)

               10        20        30        40        50        60
pF1KB8 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LTHNDSVVIVDERRRPRRNARRLPQDHADSCVVSSDDEELSRDRDVYVTTHTPRNARDEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LTHNDSVVIVDERRRPRRNARRLPQDHADSCVVSSDDEELSRDRDVYVTTHTPRNARDEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI
              130       140       150       160       170       180

              190
pF1KB8 NHKRYHPIYI
       ::::::::::
CCDS47 NHKRYHPIYI
              190

>>CCDS54713.1 RNF4 gene_id:6047|Hs108|chr4                (113 aa)
 initn: 440 init1: 440 opt: 440  Z-score: 379.7  bits: 76.2 E(32554): 7.9e-15
Smith-Waterman score: 443; 72.5% identity (78.9% similar) in 109 aa overlap (1-95:1-109)

               10        20        30        40        50        60
pF1KB8 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVD
               10        20        30        40        50        60

               70                      80        90       100      
pF1KB8 LTHNDSVVIVD--------------ERRRPRRNARRLPQDHADSCVVSSDDEELSRDRDV
       :::::::::::               .:  : ..  .::. : : :.:.           
CCDS54 LTHNDSVVIVDGPQVLSVVPSAWTDTQRSCRMDVSSFPQNAAMSSVASASVIP       
               70        80        90       100       110          

        110       120       130       140       150       160      
pF1KB8 YVTTHTPRNARDEGATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS




190 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:20:06 2016 done: Fri Nov  4 11:20:06 2016
 Total Scan time:  1.910 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]