FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8271, 317 aa
  1>>>pF1KB8271 317 - 317 aa - 317 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4821+/-0.00109; mu= 1.9484+/- 0.064
 mean_var=193.3443+/-39.328, 0's: 0 Z-trim(109.6): 28  B-trim: 70 in 1/51
 Lambda= 0.092238
 statistics sampled from 11015 (11027) to 11015 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.339), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS12647.1 APOE gene_id:348|Hs108|chr19           ( 317) 2045 284.4 8.1e-77


>>CCDS12647.1 APOE gene_id:348|Hs108|chr19                (317 aa)
 initn: 2045 init1: 2045 opt: 2045  Z-score: 1492.6  bits: 284.4 E(32554): 8.1e-77
Smith-Waterman score: 2045; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)

               10        20        30        40        50        60
pF1KB8 MKVLWAALLVTFLAGCQAKVEQAVETEPEPELRQQTEWQSGQRWELALGRFWDYLRWVQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MKVLWAALLVTFLAGCQAKVEQAVETEPEPELRQQTEWQSGQRWELALGRFWDYLRWVQT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 QAGAREGAERGLSAIRERLGPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QAGAREGAERGLSAIRERLGPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAFQARLKSWFEPLVEDMQRQWAGLVEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAFQARLKSWFEPLVEDMQRQWAGLVEK
              250       260       270       280       290       300

              310       
pF1KB8 VQAAVGTSAAPVPSDNH
       :::::::::::::::::
CCDS12 VQAAVGTSAAPVPSDNH
              310       




317 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:16:46 2016 done: Fri Nov  4 11:16:46 2016
 Total Scan time:  2.830 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]