Result of FASTA (omim) for
pF1KB8270
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8270, 269 aa
1>>>pF1KB8270 269 - 269 aa - 269 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3396+/-0.000356; mu= 9.2366+/- 0.022
mean_var=100.2878+/-19.656, 0's: 0 Z-trim(115.4): 129 B-trim: 33 in 1/58
Lambda= 0.128071
statistics sampled from 25671 (25814) to 25671 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.303), width: 16
Scan time: 6.760
The best scores are: opt bits E(85289)
NP_940991 (OMIM: 109480,111380) basigin isoform 2 ( 269) 1780 339.3 4.4e-93
NP_001309172 (OMIM: 109480,111380) basigin isoform ( 269) 1780 339.3 4.4e-93
NP_001719 (OMIM: 109480,111380) basigin isoform 1 ( 385) 1640 313.6 3.6e-85
XP_016882662 (OMIM: 109480,111380) PREDICTED: basi ( 385) 1640 313.6 3.6e-85
NP_940993 (OMIM: 109480,111380) basigin isoform 4 ( 205) 1310 252.4 4.9e-67
NP_940992 (OMIM: 109480,111380) basigin isoform 3 ( 176) 1164 225.4 5.7e-59
NP_059429 (OMIM: 612820) neuroplastin isoform a pr ( 282) 622 125.4 1.2e-28
NP_036560 (OMIM: 612820) neuroplastin isoform b pr ( 398) 612 123.6 5.6e-28
NP_001154836 (OMIM: 612820) neuroplastin isoform d ( 278) 602 121.7 1.5e-27
NP_001154835 (OMIM: 612820) neuroplastin isoform c ( 394) 592 119.9 7.2e-27
XP_011519754 (OMIM: 612820) PREDICTED: neuroplasti ( 372) 548 111.8 1.9e-24
XP_011541448 (OMIM: 615669) PREDICTED: embigin iso ( 277) 240 54.8 2e-07
NP_940851 (OMIM: 615669) embigin precursor [Homo s ( 327) 240 54.8 2.3e-07
NP_001155179 (OMIM: 607761,612581) kin of IRRE-lik ( 600) 192 46.1 0.00018
NP_115920 (OMIM: 607761,612581) kin of IRRE-like p ( 778) 192 46.2 0.00022
XP_011541333 (OMIM: 607761,612581) PREDICTED: kin ( 778) 192 46.2 0.00022
XP_016873909 (OMIM: 607761,612581) PREDICTED: kin ( 778) 192 46.2 0.00022
XP_011541332 (OMIM: 607761,612581) PREDICTED: kin ( 784) 192 46.2 0.00022
XP_011541330 (OMIM: 607761,612581) PREDICTED: kin ( 803) 192 46.2 0.00023
XP_011541329 (OMIM: 607761,612581) PREDICTED: kin ( 803) 192 46.2 0.00023
XP_016873907 (OMIM: 607761,612581) PREDICTED: kin ( 803) 192 46.2 0.00023
XP_011541328 (OMIM: 607761,612581) PREDICTED: kin ( 809) 192 46.2 0.00023
XP_011541335 (OMIM: 607761,612581) PREDICTED: kin ( 766) 188 45.5 0.00036
NP_001288026 (OMIM: 607761,612581) kin of IRRE-lik ( 766) 188 45.5 0.00036
XP_011541334 (OMIM: 607761,612581) PREDICTED: kin ( 772) 188 45.5 0.00037
XP_016873908 (OMIM: 607761,612581) PREDICTED: kin ( 791) 188 45.5 0.00037
NP_001264214 (OMIM: 613773) protein turtle homolog (1437) 168 41.9 0.0078
XP_011540997 (OMIM: 613773) PREDICTED: protein tur (1441) 168 41.9 0.0079
XP_016872884 (OMIM: 613773) PREDICTED: protein tur (1444) 168 41.9 0.0079
XP_016872883 (OMIM: 613773) PREDICTED: protein tur (1451) 168 41.9 0.0079
XP_011540996 (OMIM: 613773) PREDICTED: protein tur (1475) 168 41.9 0.008
XP_016872882 (OMIM: 613773) PREDICTED: protein tur (1508) 168 41.9 0.0082
XP_011540994 (OMIM: 613773) PREDICTED: protein tur (1535) 168 42.0 0.0083
XP_011540993 (OMIM: 613773) PREDICTED: protein tur (1539) 168 42.0 0.0083
>>NP_940991 (OMIM: 109480,111380) basigin isoform 2 [Hom (269 aa)
initn: 1780 init1: 1780 opt: 1780 Z-score: 1792.1 bits: 339.3 E(85289): 4.4e-93
Smith-Waterman score: 1780; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)
10 20 30 40 50 60
pF1KB8 MAAALFVLLGFALLGTHGASGAAGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 MAAALFVLLGFALLGTHGASGAAGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 VLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 TAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 GQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLD
190 200 210 220 230 240
250 260
pF1KB8 DDDAGSAPLKSSGQHQNDKGKNVRQRNSS
:::::::::::::::::::::::::::::
NP_940 DDDAGSAPLKSSGQHQNDKGKNVRQRNSS
250 260
>>NP_001309172 (OMIM: 109480,111380) basigin isoform 2 p (269 aa)
initn: 1780 init1: 1780 opt: 1780 Z-score: 1792.1 bits: 339.3 E(85289): 4.4e-93
Smith-Waterman score: 1780; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)
10 20 30 40 50 60
pF1KB8 MAAALFVLLGFALLGTHGASGAAGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAALFVLLGFALLGTHGASGAAGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLD
190 200 210 220 230 240
250 260
pF1KB8 DDDAGSAPLKSSGQHQNDKGKNVRQRNSS
:::::::::::::::::::::::::::::
NP_001 DDDAGSAPLKSSGQHQNDKGKNVRQRNSS
250 260
>>NP_001719 (OMIM: 109480,111380) basigin isoform 1 prec (385 aa)
initn: 1640 init1: 1640 opt: 1640 Z-score: 1650.1 bits: 313.6 E(85289): 3.6e-85
Smith-Waterman score: 1640; 100.0% identity (100.0% similar) in 246 aa overlap (24-269:140-385)
10 20 30 40 50
pF1KB8 MAAALFVLLGFALLGTHGASGAAGTVFTTVEDLGSKILLTCSLNDSATEVTGH
::::::::::::::::::::::::::::::
NP_001 ASNDPDRNHLTRAPRVKWVRAQAVVLVLEPGTVFTTVEDLGSKILLTCSLNDSATEVTGH
110 120 130 140 150 160
60 70 80 90 100 110
pF1KB8 RWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSS
170 180 190 200 210 220
120 130 140 150 160 170
pF1KB8 EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIEN
230 240 250 260 270 280
180 190 200 210 220 230
pF1KB8 LNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRR
290 300 310 320 330 340
240 250 260
pF1KB8 KPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS
::::::::::::::::::::::::::::::::::::
NP_001 KPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS
350 360 370 380
>>XP_016882662 (OMIM: 109480,111380) PREDICTED: basigin (385 aa)
initn: 1640 init1: 1640 opt: 1640 Z-score: 1650.1 bits: 313.6 E(85289): 3.6e-85
Smith-Waterman score: 1640; 100.0% identity (100.0% similar) in 246 aa overlap (24-269:140-385)
10 20 30 40 50
pF1KB8 MAAALFVLLGFALLGTHGASGAAGTVFTTVEDLGSKILLTCSLNDSATEVTGH
::::::::::::::::::::::::::::::
XP_016 ASNDPDRNHLTRAPRVKWVRAQAVVLVLEPGTVFTTVEDLGSKILLTCSLNDSATEVTGH
110 120 130 140 150 160
60 70 80 90 100 110
pF1KB8 RWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSS
170 180 190 200 210 220
120 130 140 150 160 170
pF1KB8 EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIEN
230 240 250 260 270 280
180 190 200 210 220 230
pF1KB8 LNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRR
290 300 310 320 330 340
240 250 260
pF1KB8 KPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS
::::::::::::::::::::::::::::::::::::
XP_016 KPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS
350 360 370 380
>>NP_940993 (OMIM: 109480,111380) basigin isoform 4 [Hom (205 aa)
initn: 1307 init1: 1307 opt: 1310 Z-score: 1324.5 bits: 252.4 E(85289): 4.9e-67
Smith-Waterman score: 1310; 95.2% identity (96.6% similar) in 207 aa overlap (63-269:3-205)
40 50 60 70 80 90
pF1KB8 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPE
. :: : . .:::::::::::::::::
NP_940 MKQSDASPQE----RVDSDDQWGEYSCVFLPE
10 20
100 110 120 130 140 150
pF1KB8 PMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 PMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMN
30 40 50 60 70 80
160 170 180 190 200 210
pF1KB8 GSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALWPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 GSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALWPF
90 100 110 120 130 140
220 230 240 250 260
pF1KB8 LGIVAEVLVLVTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 LGIVAEVLVLVTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS
150 160 170 180 190 200
>>NP_940992 (OMIM: 109480,111380) basigin isoform 3 [Hom (176 aa)
initn: 1164 init1: 1164 opt: 1164 Z-score: 1179.7 bits: 225.4 E(85289): 5.7e-59
Smith-Waterman score: 1164; 100.0% identity (100.0% similar) in 176 aa overlap (94-269:1-176)
70 80 90 100 110 120
pF1KB8 EDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAM
::::::::::::::::::::::::::::::
NP_940 MGTANIQLHGPPRVKAVKSSEHINEGETAM
10 20 30
130 140 150 160 170 180
pF1KB8 LVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 LVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY
40 50 60 70 80 90
190 200 210 220 230 240
pF1KB8 RCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 RCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDDD
100 110 120 130 140 150
250 260
pF1KB8 AGSAPLKSSGQHQNDKGKNVRQRNSS
::::::::::::::::::::::::::
NP_940 AGSAPLKSSGQHQNDKGKNVRQRNSS
160 170
>>NP_059429 (OMIM: 612820) neuroplastin isoform a precur (282 aa)
initn: 498 init1: 363 opt: 622 Z-score: 635.5 bits: 125.4 E(85289): 1.2e-28
Smith-Waterman score: 622; 38.1% identity (69.1% similar) in 278 aa overlap (1-269:10-282)
10 20 30 40
pF1KB8 MAAALFVLLGFALLGTHGASGAAGTVFTTVEDL--GSKIL---LTCSLNDS
.: .:... : .:: ::. . :. : . : .: : :.:..:
NP_059 MSGSSLPSALALSLLLVSG-SLLPGPGAAQNEPRIVTSEEVIIRDSPVLPVTLQCNLTSS
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 ATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSD--DQWGEYSCV--FLPEPMGTANIQLH
. .: : :.:: :. ... :..... .. ::: :: :. : ..:.:...
NP_059 SHTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVK
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS
. : . . : ::. :::. : . ::: . : :: : : .. ..: : .:::. .
NP_059 AAPDITGHKRSENKNEGQDATMYCKSVGYPH-PDWIWRKKENGMPMDIVNTS-GRFFIIN
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVL
... .::.: ::.. :::.:.::.:.. :: ... .:::::::: :::::::.::...:
NP_059 KENYTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIIL
180 190 200 210 220 230
230 240 250 260
pF1KB8 VTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS
:.:: .::::..:..: :::. ..:.:... . : : ::.::::..
NP_059 VVIIVVYEKRKRPDEVPDDDEP-AGPMKTNSTN-NHKDKNLRQRNTN
240 250 260 270 280
>>NP_036560 (OMIM: 612820) neuroplastin isoform b precur (398 aa)
initn: 498 init1: 363 opt: 612 Z-score: 623.3 bits: 123.6 E(85289): 5.6e-28
Smith-Waterman score: 612; 40.1% identity (72.2% similar) in 237 aa overlap (37-269:166-398)
10 20 30 40 50 60
pF1KB8 VLLGFALLGTHGASGAAGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA
. : :.:..:. .: : :.:: :.
NP_036 IRAQATISVLQKPRIVTSEEVIIRDSPVLPVTLQCNLTSSSHTLTYSYWTKNGVELSATR
140 150 160 170 180 190
70 80 90 100 110 120
pF1KB8 LPGQKTEFKVDSD--DQWGEYSCV--FLPEPMGTANIQLHGPPRVKAVKSSEHINEGETA
... :..... .. ::: :: :. : ..:.:.... : . . : ::. :::. :
NP_036 KNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDA
200 210 220 230 240 250
130 140 150 160 170 180
pF1KB8 MLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ
. ::: . : :: : : .. ..: : .:::. .... .::.: ::.. :::.
NP_036 TMYCKSVGYPH-PDWIWRKKENGMPMDIVNTS-GRFFIINKENYTELNIVNLQITEDPGE
260 270 280 290 300 310
190 200 210 220 230 240
pF1KB8 YRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDD
:.::.:.. :: ... .:::::::: :::::::.::...::.:: .::::..:..: :::
NP_036 YECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIILVVIIVVYEKRKRPDEVPDDD
320 330 340 350 360 370
250 260
pF1KB8 DAGSAPLKSSGQHQNDKGKNVRQRNSS
. ..:.:... . : : ::.::::..
NP_036 EP-AGPMKTNSTN-NHKDKNLRQRNTN
380 390
>>NP_001154836 (OMIM: 612820) neuroplastin isoform d pre (278 aa)
initn: 451 init1: 334 opt: 602 Z-score: 615.6 bits: 121.7 E(85289): 1.5e-27
Smith-Waterman score: 602; 38.1% identity (68.0% similar) in 278 aa overlap (1-269:10-278)
10 20 30 40
pF1KB8 MAAALFVLLGFALLGTHGASGAAGTVFTTVEDL--GSKIL---LTCSLNDS
.: .:... : .:: ::. . :. : . : .: : :.:..:
NP_001 MSGSSLPSALALSLLLVSG-SLLPGPGAAQNEPRIVTSEEVIIRDSPVLPVTLQCNLTSS
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 ATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSD--DQWGEYSCV--FLPEPMGTANIQLH
. .: : :.:: :. ... :..... .. ::: :: :. : ..:.:...
NP_001 SHTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVK
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS
. : . . : ::. :::. : . ::: . : :: : : .. ..: : .:::. .
NP_001 AAPDITGHKRSENKNEGQDATMYCKSVGYPH-PDWIWRKKENGMPMDIVNTS-GRFFIIN
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVL
... .::.: ::.. :::.:.::.:.. :: ... .:::::::: :::::::.::...:
NP_001 KENYTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIIL
180 190 200 210 220 230
230 240 250 260
pF1KB8 VTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS
:.:: .::::..:..: ::: :.:... . : : ::.::::..
NP_001 VVIIVVYEKRKRPDEV---PDAG--PMKTNSTN-NHKDKNLRQRNTN
240 250 260 270
>>NP_001154835 (OMIM: 612820) neuroplastin isoform c pre (394 aa)
initn: 451 init1: 334 opt: 592 Z-score: 603.4 bits: 119.9 E(85289): 7.2e-27
Smith-Waterman score: 592; 40.1% identity (70.9% similar) in 237 aa overlap (37-269:166-394)
10 20 30 40 50 60
pF1KB8 VLLGFALLGTHGASGAAGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA
. : :.:..:. .: : :.:: :.
NP_001 IRAQATISVLQKPRIVTSEEVIIRDSPVLPVTLQCNLTSSSHTLTYSYWTKNGVELSATR
140 150 160 170 180 190
70 80 90 100 110 120
pF1KB8 LPGQKTEFKVDSD--DQWGEYSCV--FLPEPMGTANIQLHGPPRVKAVKSSEHINEGETA
... :..... .. ::: :: :. : ..:.:.... : . . : ::. :::. :
NP_001 KNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDA
200 210 220 230 240 250
130 140 150 160 170 180
pF1KB8 MLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ
. ::: . : :: : : .. ..: : .:::. .... .::.: ::.. :::.
NP_001 TMYCKSVGYPH-PDWIWRKKENGMPMDIVNTS-GRFFIINKENYTELNIVNLQITEDPGE
260 270 280 290 300 310
190 200 210 220 230 240
pF1KB8 YRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDD
:.::.:.. :: ... .:::::::: :::::::.::...::.:: .::::..:..:
NP_001 YECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIILVVIIVVYEKRKRPDEV---P
320 330 340 350 360 370
250 260
pF1KB8 DAGSAPLKSSGQHQNDKGKNVRQRNSS
::: :.:... . : : ::.::::..
NP_001 DAG--PMKTNSTN-NHKDKNLRQRNTN
380 390
269 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:14:54 2016 done: Fri Nov 4 11:14:55 2016
Total Scan time: 6.760 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]