Result of FASTA (ccds) for
pF1KB8270
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8270, 269 aa
1>>>pF1KB8270 269 - 269 aa - 269 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1785+/-0.000811; mu= 10.1471+/- 0.048
mean_var=84.7180+/-16.653, 0's: 0 Z-trim(108.4): 66 B-trim: 2 in 1/52
Lambda= 0.139343
statistics sampled from 10122 (10187) to 10122 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.313), width: 16
Scan time: 2.250
The best scores are: opt bits E(32554)
CCDS12034.1 BSG gene_id:682|Hs108|chr19 ( 269) 1780 367.5 5.6e-102
CCDS12033.1 BSG gene_id:682|Hs108|chr19 ( 385) 1640 339.4 2.2e-93
CCDS12032.1 BSG gene_id:682|Hs108|chr19 ( 205) 1310 273.0 1.2e-73
CCDS58635.1 BSG gene_id:682|Hs108|chr19 ( 176) 1164 243.6 7.3e-65
CCDS10250.1 NPTN gene_id:27020|Hs108|chr15 ( 282) 622 134.7 6.9e-32
CCDS10249.1 NPTN gene_id:27020|Hs108|chr15 ( 398) 612 132.8 3.7e-31
CCDS58379.1 NPTN gene_id:27020|Hs108|chr15 ( 278) 602 130.7 1.1e-30
CCDS58380.1 NPTN gene_id:27020|Hs108|chr15 ( 394) 592 128.7 6e-30
>>CCDS12034.1 BSG gene_id:682|Hs108|chr19 (269 aa)
initn: 1780 init1: 1780 opt: 1780 Z-score: 1944.4 bits: 367.5 E(32554): 5.6e-102
Smith-Waterman score: 1780; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)
10 20 30 40 50 60
pF1KB8 MAAALFVLLGFALLGTHGASGAAGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAAALFVLLGFALLGTHGASGAAGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLD
190 200 210 220 230 240
250 260
pF1KB8 DDDAGSAPLKSSGQHQNDKGKNVRQRNSS
:::::::::::::::::::::::::::::
CCDS12 DDDAGSAPLKSSGQHQNDKGKNVRQRNSS
250 260
>>CCDS12033.1 BSG gene_id:682|Hs108|chr19 (385 aa)
initn: 1640 init1: 1640 opt: 1640 Z-score: 1789.9 bits: 339.4 E(32554): 2.2e-93
Smith-Waterman score: 1640; 100.0% identity (100.0% similar) in 246 aa overlap (24-269:140-385)
10 20 30 40 50
pF1KB8 MAAALFVLLGFALLGTHGASGAAGTVFTTVEDLGSKILLTCSLNDSATEVTGH
::::::::::::::::::::::::::::::
CCDS12 ASNDPDRNHLTRAPRVKWVRAQAVVLVLEPGTVFTTVEDLGSKILLTCSLNDSATEVTGH
110 120 130 140 150 160
60 70 80 90 100 110
pF1KB8 RWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSS
170 180 190 200 210 220
120 130 140 150 160 170
pF1KB8 EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIEN
230 240 250 260 270 280
180 190 200 210 220 230
pF1KB8 LNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRR
290 300 310 320 330 340
240 250 260
pF1KB8 KPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS
::::::::::::::::::::::::::::::::::::
CCDS12 KPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS
350 360 370 380
>>CCDS12032.1 BSG gene_id:682|Hs108|chr19 (205 aa)
initn: 1307 init1: 1307 opt: 1310 Z-score: 1435.6 bits: 273.0 E(32554): 1.2e-73
Smith-Waterman score: 1310; 95.2% identity (96.6% similar) in 207 aa overlap (63-269:3-205)
40 50 60 70 80 90
pF1KB8 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPE
. :: : . .:::::::::::::::::
CCDS12 MKQSDASPQE----RVDSDDQWGEYSCVFLPE
10 20
100 110 120 130 140 150
pF1KB8 PMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMN
30 40 50 60 70 80
160 170 180 190 200 210
pF1KB8 GSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALWPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALWPF
90 100 110 120 130 140
220 230 240 250 260
pF1KB8 LGIVAEVLVLVTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LGIVAEVLVLVTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS
150 160 170 180 190 200
>>CCDS58635.1 BSG gene_id:682|Hs108|chr19 (176 aa)
initn: 1164 init1: 1164 opt: 1164 Z-score: 1278.0 bits: 243.6 E(32554): 7.3e-65
Smith-Waterman score: 1164; 100.0% identity (100.0% similar) in 176 aa overlap (94-269:1-176)
70 80 90 100 110 120
pF1KB8 EDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAM
::::::::::::::::::::::::::::::
CCDS58 MGTANIQLHGPPRVKAVKSSEHINEGETAM
10 20 30
130 140 150 160 170 180
pF1KB8 LVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY
40 50 60 70 80 90
190 200 210 220 230 240
pF1KB8 RCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDDD
100 110 120 130 140 150
250 260
pF1KB8 AGSAPLKSSGQHQNDKGKNVRQRNSS
::::::::::::::::::::::::::
CCDS58 AGSAPLKSSGQHQNDKGKNVRQRNSS
160 170
>>CCDS10250.1 NPTN gene_id:27020|Hs108|chr15 (282 aa)
initn: 498 init1: 363 opt: 622 Z-score: 685.9 bits: 134.7 E(32554): 6.9e-32
Smith-Waterman score: 622; 38.1% identity (69.1% similar) in 278 aa overlap (1-269:10-282)
10 20 30 40
pF1KB8 MAAALFVLLGFALLGTHGASGAAGTVFTTVEDL--GSKIL---LTCSLNDS
.: .:... : .:: ::. . :. : . : .: : :.:..:
CCDS10 MSGSSLPSALALSLLLVSG-SLLPGPGAAQNEPRIVTSEEVIIRDSPVLPVTLQCNLTSS
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 ATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSD--DQWGEYSCV--FLPEPMGTANIQLH
. .: : :.:: :. ... :..... .. ::: :: :. : ..:.:...
CCDS10 SHTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVK
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS
. : . . : ::. :::. : . ::: . : :: : : .. ..: : .:::. .
CCDS10 AAPDITGHKRSENKNEGQDATMYCKSVGYPH-PDWIWRKKENGMPMDIVNTS-GRFFIIN
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVL
... .::.: ::.. :::.:.::.:.. :: ... .:::::::: :::::::.::...:
CCDS10 KENYTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIIL
180 190 200 210 220 230
230 240 250 260
pF1KB8 VTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS
:.:: .::::..:..: :::. ..:.:... . : : ::.::::..
CCDS10 VVIIVVYEKRKRPDEVPDDDEP-AGPMKTNSTN-NHKDKNLRQRNTN
240 250 260 270 280
>>CCDS10249.1 NPTN gene_id:27020|Hs108|chr15 (398 aa)
initn: 498 init1: 363 opt: 612 Z-score: 672.8 bits: 132.8 E(32554): 3.7e-31
Smith-Waterman score: 612; 40.1% identity (72.2% similar) in 237 aa overlap (37-269:166-398)
10 20 30 40 50 60
pF1KB8 VLLGFALLGTHGASGAAGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA
. : :.:..:. .: : :.:: :.
CCDS10 IRAQATISVLQKPRIVTSEEVIIRDSPVLPVTLQCNLTSSSHTLTYSYWTKNGVELSATR
140 150 160 170 180 190
70 80 90 100 110 120
pF1KB8 LPGQKTEFKVDSD--DQWGEYSCV--FLPEPMGTANIQLHGPPRVKAVKSSEHINEGETA
... :..... .. ::: :: :. : ..:.:.... : . . : ::. :::. :
CCDS10 KNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDA
200 210 220 230 240 250
130 140 150 160 170 180
pF1KB8 MLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ
. ::: . : :: : : .. ..: : .:::. .... .::.: ::.. :::.
CCDS10 TMYCKSVGYPH-PDWIWRKKENGMPMDIVNTS-GRFFIINKENYTELNIVNLQITEDPGE
260 270 280 290 300 310
190 200 210 220 230 240
pF1KB8 YRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDD
:.::.:.. :: ... .:::::::: :::::::.::...::.:: .::::..:..: :::
CCDS10 YECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIILVVIIVVYEKRKRPDEVPDDD
320 330 340 350 360 370
250 260
pF1KB8 DAGSAPLKSSGQHQNDKGKNVRQRNSS
. ..:.:... . : : ::.::::..
CCDS10 EP-AGPMKTNSTN-NHKDKNLRQRNTN
380 390
>>CCDS58379.1 NPTN gene_id:27020|Hs108|chr15 (278 aa)
initn: 451 init1: 334 opt: 602 Z-score: 664.3 bits: 130.7 E(32554): 1.1e-30
Smith-Waterman score: 602; 38.1% identity (68.0% similar) in 278 aa overlap (1-269:10-278)
10 20 30 40
pF1KB8 MAAALFVLLGFALLGTHGASGAAGTVFTTVEDL--GSKIL---LTCSLNDS
.: .:... : .:: ::. . :. : . : .: : :.:..:
CCDS58 MSGSSLPSALALSLLLVSG-SLLPGPGAAQNEPRIVTSEEVIIRDSPVLPVTLQCNLTSS
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 ATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSD--DQWGEYSCV--FLPEPMGTANIQLH
. .: : :.:: :. ... :..... .. ::: :: :. : ..:.:...
CCDS58 SHTLTYSYWTKNGVELSATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVK
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS
. : . . : ::. :::. : . ::: . : :: : : .. ..: : .:::. .
CCDS58 AAPDITGHKRSENKNEGQDATMYCKSVGYPH-PDWIWRKKENGMPMDIVNTS-GRFFIIN
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVL
... .::.: ::.. :::.:.::.:.. :: ... .:::::::: :::::::.::...:
CCDS58 KENYTELNIVNLQITEDPGEYECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIIL
180 190 200 210 220 230
230 240 250 260
pF1KB8 VTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS
:.:: .::::..:..: ::: :.:... . : : ::.::::..
CCDS58 VVIIVVYEKRKRPDEV---PDAG--PMKTNSTN-NHKDKNLRQRNTN
240 250 260 270
>>CCDS58380.1 NPTN gene_id:27020|Hs108|chr15 (394 aa)
initn: 451 init1: 334 opt: 592 Z-score: 651.1 bits: 128.7 E(32554): 6e-30
Smith-Waterman score: 592; 40.1% identity (70.9% similar) in 237 aa overlap (37-269:166-394)
10 20 30 40 50 60
pF1KB8 VLLGFALLGTHGASGAAGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA
. : :.:..:. .: : :.:: :.
CCDS58 IRAQATISVLQKPRIVTSEEVIIRDSPVLPVTLQCNLTSSSHTLTYSYWTKNGVELSATR
140 150 160 170 180 190
70 80 90 100 110 120
pF1KB8 LPGQKTEFKVDSD--DQWGEYSCV--FLPEPMGTANIQLHGPPRVKAVKSSEHINEGETA
... :..... .. ::: :: :. : ..:.:.... : . . : ::. :::. :
CCDS58 KNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDA
200 210 220 230 240 250
130 140 150 160 170 180
pF1KB8 MLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ
. ::: . : :: : : .. ..: : .:::. .... .::.: ::.. :::.
CCDS58 TMYCKSVGYPH-PDWIWRKKENGMPMDIVNTS-GRFFIINKENYTELNIVNLQITEDPGE
260 270 280 290 300 310
190 200 210 220 230 240
pF1KB8 YRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDD
:.::.:.. :: ... .:::::::: :::::::.::...::.:: .::::..:..:
CCDS58 YECNATNAIGSASVVTVLRVRSHLAPLWPFLGILAEIIILVVIIVVYEKRKRPDEV---P
320 330 340 350 360 370
250 260
pF1KB8 DAGSAPLKSSGQHQNDKGKNVRQRNSS
::: :.:... . : : ::.::::..
CCDS58 DAG--PMKTNSTN-NHKDKNLRQRNTN
380 390
269 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:14:53 2016 done: Fri Nov 4 11:14:54 2016
Total Scan time: 2.250 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]