FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8247, 257 aa
  1>>>pF1KB8247 257 - 257 aa - 257 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5987+/-0.000943; mu= 12.5065+/- 0.056
 mean_var=59.7376+/-11.981, 0's: 0 Z-trim(103.7): 7  B-trim: 0 in 0/50
 Lambda= 0.165940
 statistics sampled from 7559 (7561) to 7559 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.232), width:  16
 Scan time:  1.870

The best scores are:                                      opt bits E(32554)
CCDS12515.2 PSMD8 gene_id:5714|Hs108|chr19         ( 350) 1680 410.7 6.6e-115


>>CCDS12515.2 PSMD8 gene_id:5714|Hs108|chr19              (350 aa)
 initn: 1680 init1: 1680 opt: 1680  Z-score: 2176.4  bits: 410.7 E(32554): 6.6e-115
Smith-Waterman score: 1680; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:94-350)

                                             10        20        30
pF1KB8                               MYEQLKGEWNRKSPNLSKCGEELGRLKLVL
                                     ::::::::::::::::::::::::::::::
CCDS12 MAAAAVNGAAGFSSSGPAATSGAVLQAATGMYEQLKGEWNRKSPNLSKCGEELGRLKLVL
            70        80        90       100       110       120   

               40        50        60        70        80        90
pF1KB8 LELNFLPTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LELNFLPTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLP
           130       140       150       160       170       180   

              100       110       120       130       140       150
pF1KB8 ESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNK
           190       200       210       220       230       240   

              160       170       180       190       200       210
pF1KB8 VFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYA
           250       260       270       280       290       300   

              220       230       240       250       
pF1KB8 KKRGWVLGPNNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMIV
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KKRGWVLGPNNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMIV
           310       320       330       340       350




257 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:58:15 2016 done: Fri Nov  4 10:58:15 2016
 Total Scan time:  1.870 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]