FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8246, 245 aa
  1>>>pF1KB8246 245 - 245 aa - 245 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1186+/-0.000383; mu= 14.9994+/- 0.024
 mean_var=57.8324+/-11.611, 0's: 0 Z-trim(110.9): 8  B-trim: 0 in 0/54
 Lambda= 0.168651
 statistics sampled from 19381 (19388) to 19381 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.595), E-opt: 0.2 (0.227), width:  16
 Scan time:  5.290

The best scores are:                                      opt bits E(85289)
NP_002203 (OMIM: 602912) eukaryotic translation in ( 245) 1593 395.9 3.3e-110
NP_001254739 (OMIM: 602912) eukaryotic translation ( 245) 1593 395.9 3.3e-110
NP_852133 (OMIM: 602912) eukaryotic translation in ( 245) 1593 395.9 3.3e-110
NP_852131 (OMIM: 602912) eukaryotic translation in ( 226)  767 194.9 9.8e-50


>>NP_002203 (OMIM: 602912) eukaryotic translation initia  (245 aa)
 initn: 1593 init1: 1593 opt: 1593  Z-score: 2099.5  bits: 395.9 E(85289): 3.3e-110
Smith-Waterman score: 1593; 100.0% identity (100.0% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KB8 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL
              190       200       210       220       230       240

            
pF1KB8 IDSLT
       :::::
NP_002 IDSLT
            

>>NP_001254739 (OMIM: 602912) eukaryotic translation ini  (245 aa)
 initn: 1593 init1: 1593 opt: 1593  Z-score: 2099.5  bits: 395.9 E(85289): 3.3e-110
Smith-Waterman score: 1593; 100.0% identity (100.0% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KB8 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL
              190       200       210       220       230       240

            
pF1KB8 IDSLT
       :::::
NP_001 IDSLT
            

>>NP_852133 (OMIM: 602912) eukaryotic translation initia  (245 aa)
 initn: 1593 init1: 1593 opt: 1593  Z-score: 2099.5  bits: 395.9 E(85289): 3.3e-110
Smith-Waterman score: 1593; 100.0% identity (100.0% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KB8 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL
              190       200       210       220       230       240

            
pF1KB8 IDSLT
       :::::
NP_852 IDSLT
            

>>NP_852131 (OMIM: 602912) eukaryotic translation initia  (226 aa)
 initn: 992 init1: 767 opt: 767  Z-score: 1013.9  bits: 194.9 E(85289): 9.8e-50
Smith-Waterman score: 939; 68.3% identity (73.9% similar) in 249 aa overlap (1-245:1-226)

               10        20        30        40        50        60
pF1KB8 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG
       :::::::::::::::::::::::::::::::::::               ..  :    :
NP_852 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYRC-------------GGSPGAYGGG
               10        20        30                     40       

               70        80          90       100       110        
pF1KB8 RMCVGNRHGLLVPNNTTDQELQHIRNSLP--DTVQIRRVEERLSALGNVTTCNDY--VAL
       . :.:      : .. . .    .   ::    :..  :  : :.      :.    .: 
NP_852 EACAG------VKSSGSGR----VPAPLPRHHRVHVPTVCSRASSPIPSPWCTRLSPAAA
        50              60            70        80        90       

        120       130       140       150       160       170      
pF1KB8 VHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSL
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 SSGACVWETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSL
       100       110       120       130       140       150       

        180       190       200       210       220       230      
pF1KB8 LQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 LQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSM
       160       170       180       190       200       210       

        240     
pF1KB8 RDSLIDSLT
       :::::::::
NP_852 RDSLIDSLT
       220      




245 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:57:34 2016 done: Fri Nov  4 10:57:35 2016
 Total Scan time:  5.290 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]